Evidence map›Paper›PMID 40241747›Full record

ArticleiScience2025

Host-encoded DNA methyltransferases modify the epigenome and host tropism of invading phages.

Michiko Takahashi, Satoshi Hiraoka, Yuki Matsumoto, Rikako Shibagaki, Takako Ujihara, Hiromichi Maeda, Satoru Seo, Keizo Nagasaki, Hiroaki Takeuchi, Shigenobu Matsuzaki

Abstract read
In one paragraph

Article in iScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Differentiating commensal and disease-associatedFrontiers in veterinary science · 2026
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Michiko TakahashiDepartment of Surgery, Kochi Medical School, Kochi University, Nankoku, Kochi, Japan.
Satoshi HiraokaResearch Center for Bioscience and Nanoscience (CeBN), Research Institute for Marine Resources Utilization, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa, Japan.
Yuki MatsumotoFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Kochi, Japan.
Rikako ShibagakiDepartment of Surgery, Kochi Medical School, Kochi University, Nankoku, Kochi, Japan.
Takako UjiharaScience Research Center, Kochi University, Nankoku, Kochi, Japan.
Hiromichi MaedaDepartment of Surgery, Kochi Medical School, Kochi University, Nankoku, Kochi, Japan.
Satoru SeoDepartment of Surgery, Kochi Medical School, Kochi University, Nankoku, Kochi, Japan.
Keizo NagasakiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Kochi, Japan.
Hiroaki TakeuchiDepartment of Medical Laboratory Sciences, Health and Science, International University of Health and Welfare Graduate School, Narita, Chiba, Japan.
Shigenobu MatsuzakiFaculty of Health Sciences, Kochi Gakuen University, Kochi, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Restriction modification (RM) systems are ubiquitous bacterial defense systems; however, some phages evade RM system and adapt to their bacterial hosts. In such cases, phages are thought to stochastically acquire DNA methylation from host-encoded DNA methyltransferases (MTases), facilitating host adaptation. However, no studies have directly compared the methylomes of host bacteria and their infecting phages. Here, we demonstrate the epigenetic landscape of adapted phages with diverse infection histories, focusing on the broad host-range phage KHP30T as its adapts to three

Indexed as

EpigeneticsMicrobial genomicsMicrobial interactionsViral microbiology

Identifiers

PMID40241747
PMCPMC12003011

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.