Evidence map›Paper›PMID 40241383›Full record

ArticleClinical and molecular hepatology2025

Exploring methylation signatures for high de novo recurrence risk in hepatocellular carcinoma.

Da-Won Kim, Jin Hyun Park, Suk Kyun Hong, Min-Hyeok Jung, Ji-One Pyeon, Jin-Young Lee, Kyung-Suk Suh, Nam-Joon Yi, YoungRok Choi, Kwang-Woong Lee and 1 more

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Article in Clinical and molecular hepatology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Da-Won KimInterdisciplinary Program of Integrated OMICS for Biomedical Science, Yonsei University, Seoul, Korea.
Jin Hyun ParkDepartment of Internal Medicine, Seoul Metropolitan Government Seoul National University Boramae Medical Center, Seoul National University College of Medicine, Seoul, Korea.
Suk Kyun HongDepartment of Surgery, Seoul National University Hospital, Seoul, Korea.
Min-Hyeok JungR&D center, LepiDyne Inc, Seoul, Korea.
Ji-One PyeonR&D center, LepiDyne Inc, Seoul, Korea.
Jin-Young LeeDepartment of Biochemistry, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea.
Kyung-Suk SuhDepartment of Surgery, Seoul National University Hospital, Seoul, Korea.
Nam-Joon YiDepartment of Surgery, Seoul National University Hospital, Seoul, Korea.
YoungRok ChoiDepartment of Surgery, Seoul National University Hospital, Seoul, Korea.
Kwang-Woong LeeDepartment of Surgery, Seoul National University Hospital, Seoul, Korea.
Young-Joon KimR&D center, LepiDyne Inc, Seoul, Korea.

Funding

Ministry of Science and ICTNational Research Foundation of Korea 2017M3A9A7050614
6 · The paper itself

Abstract

BACKGROUND/

aimsHepatocellular carcinoma (HCC) exhibits high de novo recurrence rates post-resection. Current post-surgery recurrence prediction methods are limited, emphasizing the need for reliable biomarkers to assess recurrence risk. We aimed to develop methylation-based markers for classifying HCC patients and predicting their risk of de novo recurrence post-surgery.

methodsIn this retrospective cohort study, we analyzed data from HCC patients who underwent surgical resection in Korea, excluding those with recurrence within one year post-surgery. Using the Infinium Methylation EPIC array on 140 samples in the discovery cohort, we classified patients into low- and high-risk groups based on methylation profiles. Distinctive markers were identified through random forest analysis. These markers were validated in the cancer genome atlas (n=217), Validation cohort 1 (n=63) and experimental Validation using a methylation-sensitive high-resolution melting (MS-HRM) assay in Validation cohort 1 and Validation cohort 2 (n=63).

resultsThe low-risk recurrence group (methylation group 1; MG1) showed a methylation average of 0.73 (95% confidence interval [CI] 0.69-0.77) with a 23.5% recurrence rate, while the high-risk group (MG2) had an average of 0.17 (95% CI 0.14-0.20) with a 44.1% recurrence rate (P<0.03). Validation confirmed the applicability of methylation markers across diverse populations, showing high accuracy in predicting the probability of HCC recurrence risk (area under the curve 96.8%). The MS-HRM assay confirmed its effectiveness in predicting de novo recurrence with 95.5% sensitivity, 89.7% specificity, and 92.2% accuracy.

conclusionMethylation markers effectively classified HCC patients by de novo recurrence risk, enhancing prediction accuracy and potentially offering personalized management strategies.

Indexed as

Carcinoma, HepatocellularDNA MethylationLiver NeoplasmsNeoplasm Recurrence, LocalAdultAgedBiomarkers, TumorFemaleHumansMaleMiddle AgedRetrospective StudiesRisk FactorsROC CurveBiomarkers, TumorBiomarkerDNA methylationHepatocellular carcinomaMachine learningRecurrence

Identifiers

PMID40241383
PMCPMC12016632

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.