Evidence map›Paper›PMID 40241195›Full record

ArticleEpigenetics & chromatin2025

Drosophila architectural proteins M1BP and Opbp cooperatively form the active promoter of a ribosomal protein gene.

Igor Osadchiy, Anastasia Umnova, Galina V Pokholkova, Anton Golovnin, Vladimir A Gvozdev, Igor F Zhimulev, Pavel Georgiev, Oksana Maksimenko

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Article in Epigenetics & chromatin, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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3 citing papers in PubMed.

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5 · Who and what money

Authors and funding

8 authors.

Igor Osadchiy *Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov St., Moscow, 119334, Russia.
Anastasia Umnova *Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov St., Moscow, 119334, Russia.
Galina V PokholkovaLaboratory of Molecular Cytogenetics, Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
Anton GolovninDepartment of Drosophila Molecular Genetics, Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov St., Moscow, 119334, Russia.
Vladimir A GvozdevNRC "Kurchatov Institute"-Institute of Molecular Genetics, Moscow, 123182, Russia.
Igor F ZhimulevLaboratory of Molecular Cytogenetics, Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, 630090, Russia.
Pavel GeorgievDepartment of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov St., Moscow, 119334, Russia. georgiev_p@mail.ru.
Oksana MaksimenkoCenter for Precision Genome Editing and Genetic Technologies for Biomedicine, Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov St., Moscow, 119334, Russia. maksog@mail.ru.

Funding

Russian Science Foundation 19-74-30026-P
6 · The paper itself

Abstract

backgroundIn Drosophila, architectural proteins are frequently found in promoters, including those of genes with extremely high expression levels, such as ribosomal protein genes (RPGs). The involvement of several of these proteins in gene regulation in Drosophila has been shown, but the exact mechanisms of their possible cooperative action have not been fully elucidated.

resultsIn this study we dissected the contribution of the architectural proteins Opbp and M1BP, which are co-localized at several RPG promoters near the transcription start site, to promoter functioning. We found that Opbp has two domains that directly interact with CP190, Putzig (Pzg), and Chromator (Chro) proteins, the cofactors which are required for the activation of housekeeping (hk) gene promoters. These domains have redundant functions in vivo and can tether the cofactors forming open chromatin regions when are artificially recruited to the "closed" chromatin. Additionally, we observed interactions between M1BP and the same cofactors. In the transgene assay, the transcription driven by the 192-bp part of Rpl27A RPG promoter is fully dependent on the presence of at least one Opbp or M1BP binding site and it is sufficient for the very high activity of this promoter integrated into the hk gene cluster and moderate expression outside the cluster, while presence of both sites even more facilitates transcription.

conclusionsThis study demonstrates that different architectural proteins can work independently and in cooperation and fulfill partially redundant functions in the activation of RPG promoters.

Indexed as

DNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsPromoter Regions, GeneticRibosomal ProteinsAnimalsBinding SitesMicrotubule-Associated ProteinsNuclear ProteinsProtein BindingTranscription FactorsCP190 protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsM1BP protein, DrosophilaMicrotubule-Associated ProteinsNuclear ProteinsRibosomal ProteinsTranscription FactorsArchitectural С2Н2 proteinsChrizChroChromatorCP190Housekeeping genesPutzigRibosomal protein genesZ4Zinc-finger proteins

Identifiers

PMID40241195
PMCPMC12001521

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.