Evidence map›Paper›PMID 40240680›Full record

ArticlePlant molecular biology2025

ROOT INITIATION DEFECTIVE 1 regulates seed germination through transcription rather than alternative splicing in a temperature-dependent manner.

Shuaishuai Zhou, Miaomiao Wang, Ruoyi Chen, Wengeng Yu, Mengmeng Li, Siwen Meng, Ziru Zhang, Congcong Xia, Hongtao Zhao, Lei Liu

Erratum issuedAbstract read
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In one paragraph

Article in Plant molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Shuaishuai Zhou *Jiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.
Miaomiao Wang *Jiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.
Ruoyi Chen *Jiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.
Wengeng YuJiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.
Mengmeng LiCollege of Life Science, Hebei Normal University, Hebei, 050024, China.
Siwen MengJiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.
Ziru ZhangJiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.
Congcong XiaJiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.
Hongtao ZhaoCollege of Life Science, Hebei Normal University, Hebei, 050024, China.
Lei LiuJiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China. leiliu_cell@163.com.ORCID http://orcid.org/0000-0003-1392-3923

Funding

National Natural Science Foundation of China 31700274
6 · The paper itself

Abstract

Timely seed germination is a crucial process for plant survival and subsequent propagation, which is significantly impacted by high temperatures. ROOT INITIATION DEFECTIVE 1 (RID1), an Arabidopsis DEAH/RHA RNA helicase, has been previously reported to modulate the cellular specification of mature female gametophyte and callus initiation from hypocotyl explants through proper alternative splicing. However, the role of RID1 in the regulation of seed germination remains largely unexplored. Here, we identified that mutations in RID1 delayed seed germination more severely at 28℃ compared to 22℃. Notably, we found that the rid1-1 mutation did not significantly alter genome-wide alternative splicing patterns during seed germination compared to the wild type. Further evidences demonstrated that RID1 regulates seed germination via the abscisic acid (ABA) pathway by physically and genetically interacting with the SKIP-associated transcriptional complex. These results suggest that RID1 regulates seed germination in response to ambient temperature at the transcriptional level rather than through alternative splicing regulation. This study provides novel insights into the mechanisms underlying the regulation of seed germination.

Indexed as

Alternative SplicingArabidopsisArabidopsis ProteinsDEAD-box RNA HelicasesGerminationSeedsTranscription, GeneticAbscisic AcidGene Expression Regulation, PlantMutationTemperatureAbscisic AcidArabidopsis ProteinsDEAD-box RNA HelicasesHigh temperature responseRNA helicaseSeed germinationTranscriptional regulation

Identifiers

PMID40240680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.