Evidence map›Paper›PMID 40239145›Full record

ArticleJCO global oncology2025

Automated Detection of Kaposi Sarcoma-Associated Herpesvirus-Infected Cells in Immunohistochemical Images of Skin Biopsies.

Iftak Hussain, Juan Boza, Robert Lukande, Racheal Ayanga, Aggrey Semeere, Ethel Cesarman, Jeffrey Martin, Toby Maurer, David Erickson

Abstract read
In one paragraph

Article in JCO global oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Iftak HussainSibley School of Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY.
Juan BozaMeinig School of Biomedical Engineering, Cornell University, Ithaca, NY.
Robert LukandeDepartment of Pathology, Makerere University College of Health Sciences, Kampala, Uganda.
Racheal AyangaInfectious Diseases Institute, Makerere University College of Health Sciences, Kampala, Uganda.ORCID 0000-0002-6726-6300
Aggrey SemeereInfectious Diseases Institute, Makerere University College of Health Sciences, Kampala, Uganda.ORCID 0000-0003-1826-2239
Ethel CesarmanPathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY.ORCID 0000-0003-3303-6299
Jeffrey MartinDepartment of Epidemiology and Biostatistics, University of California, San Francisco, CA.ORCID 0000-0002-9773-3256
Toby MaurerDepartment of Dermatology, Indiana University School of Medicine, Indianapolis, IN.
David EricksonSibley School of Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY.ORCID 0000-0002-1624-9711

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 1988 to 2026
$93.6M
Technology CoreU54EB034654 · NIBIB · CORNELL UNIVERSITY · PI David Carl Erickson, Saurabh Mehta · 2023 to 2026
$7.0M
United States-East Africa HIV-Associated Malignancy Research Center (USEAHAMRC) for Career Development and the Prevention, Early Detection and Efficient Linkage to Care for Virus-related CancersU54CA254571 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARTIN, JEFFREY N · 2020 to 2025
$5.6M
Rapid Sample-to-Answer Diagnosis of Kaposi's Sarcoma Across Sub-Saharan Africa using KS-COMPLETEU01CA269199 · NCI · CORNELL UNIVERSITY · PI Ethel Cesarman, David Carl Erickson · 2022 to 2026
$3.0M
NCI NIH HHS U01 CA269199NCI NIH HHS U54 CA254571NIAID NIH HHS P30 AI027763NIBIB NIH HHS U54 EB034654
6 · The paper itself

Abstract

purposeImmunohistochemical staining for the antigen of Kaposi sarcoma (KS)-associated herpesvirus, latency-associated nuclear antigen (LANA), is helpful in diagnosing KS. A challenge lies in distinguishing anti-LANA-positive cells from morphologically similar brown counterparts. This work aims to develop an automated framework for localization and quantification of LANA positivity in whole-slide images (WSI) of skin biopsies.

methodsThe proposed framework leverages weakly supervised multiple-instance learning (MIL) to reduce false-positive predictions. A novel morphology-based slide aggregation method is introduced to improve accuracy. The framework generates interpretable heatmaps for cell localization and provides quantitative values for the percentage of positive tiles. The framework was trained and tested with a KS pathology data set prepared from skin biopsies of KS-suspected patients in Uganda.

resultsThe developed MIL framework achieved an area under the receiver operating characteristic curve of 0.99, with a sensitivity of 98.15% and specificity of 96.00% in predicting anti-LANA-positive WSIs in a test data set.

conclusionThe framework shows promise for the automated detection of LANA in skin biopsies, offering a reliable and accurate tool for identifying anti-LANA-positive cells. This method may be especially impactful in resource-limited areas that lack trained pathologists, potentially improving diagnostic capabilities in settings with limited access to expert analysis.

Indexed as

Antigens, ViralHerpesvirus 8, HumanSarcoma, KaposiSkinSkin NeoplasmsBiopsyHumansImmunohistochemistryNuclear ProteinsAntigens, Virallatency-associated nuclear antigenNuclear Proteins

Identifiers

PMID40239145
PMCPMC12137223

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.