Evidence map›Paper›PMID 40238882›Full record

ArticleScience advances2025

Mechanism of DNA replication fork breakage and PARP1 hyperactivation during replication catastrophe.

Pedro Ortega, Elodie Bournique, Junyi Li, Ambrocio Sanchez, Gisselle Santiago, Brooke R Harris, Josefine Striepen, John Maciejowski, Abby M Green, Rémi Buisson

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Collapsing retroviruses for efficient delivery of viro-toxic cargoes.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Squamous-state excursions activate APOBEC3A in cancer.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Pedro OrtegaDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, CA, USA.ORCID 0000-0003-4216-3695
Elodie BourniqueDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, CA, USA.ORCID 0000-0003-0196-7996
Junyi LiDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, CA, USA.ORCID 0009-0002-0982-1377
Ambrocio SanchezDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, CA, USA.ORCID 0000-0003-1462-1767
Gisselle SantiagoDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, CA, USA.ORCID 0000-0003-3601-0019
Brooke R HarrisDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Josefine StriepenMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
John MaciejowskiMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Abby M GreenDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-6436-2217
Rémi BuissonDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, CA, USA.ORCID 0000-0002-7196-8209

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Molecular Mechanisms of APOBEC-Induced Mutagenesis in CancerR37CA252081 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Remi Buisson · 2021 to 2026
$2.5M
Maintenance of genome integrity by the SMC5/6 complex during deaminase-mediated mutagenesisR01GM153923 · NIGMS · WASHINGTON UNIVERSITY · PI ABBY Margaret GREEN · 2025 to 2026
$594k
NF-KB regulation by the DNA damage responseR21ES036190 · NIEHS · UNIVERSITY OF CALIFORNIA-IRVINE · PI BUISSON, REMI · 2025 to 2025
$432k
Role of APOBEC3B in the Innate Immune ResponseR21AI185033 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Remi Buisson · 2025 to 2026
$425k
NCI NIH HHS P30 CA008748NCI NIH HHS R37 CA252081NIAID NIH HHS R21 AI185033NIEHS NIH HHS R21 ES036190NIGMS NIH HHS R01 GM153923
6 · The paper itself

Abstract

Ataxia telangiectasia and Rad3-related (ATR) inhibition triggers a surge in origin firing, resulting in increased levels of single-stranded DNA (ssDNA) that rapidly deplete all available RPA. This leaves ssDNA unprotected and susceptible to breakage, a phenomenon known as replication catastrophe. However, the mechanism by which unprotected ssDNA breaks remains unclear. Here, we reveal that APOBEC3B is the key enzyme targeting unprotected ssDNA at replication forks, initiating a reaction cascade that induces fork collapse and poly(ADP-ribose) polymerase 1 (PARP1) hyperactivation. Mechanistically, we demonstrate that uracils generated by APOBEC3B at replication forks are removed by UNG2, resulting in abasic sites that are subsequently cleaved by APE1 endonuclease. Moreover, we show that APE1-mediated DNA cleavage is the critical enzymatic step for PARP1 hyperactivation in cells, regardless of how abasic sites are generated on DNA. Last, we demonstrate that APOBEC3B-induced PARP1 trapping and DNA double-strand breaks drive cell sensitivity to ATR inhibition, creating a context of synthetic lethality when coupled with PARP inhibitors.

Indexed as

DNA ReplicationPoly (ADP-Ribose) Polymerase-1Cytidine DeaminaseDNA-(Apurinic or Apyrimidinic Site) LyaseDNA, Single-StrandedHumansAPEX1 protein, humanCytidine DeaminaseDNA-(Apurinic or Apyrimidinic Site) LyaseDNA, Single-StrandedPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1

Identifiers

PMID40238882
PMCPMC13109941

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.