Evidence map›Paper›PMID 40237561›Full record

ArticleNeuro-oncology2025

FOXR2 activation is not exclusive of CNS neuroblastoma.

Alexa N Siskar, Emily Hanzlik, Maria F Cardenas, Mohammad K Eldomery, Soniya Pinto, Christopher L Tinkle, Qunyu Zhang, Xiaoyu Li, Tong Lin, Sandeep K Dhanda and 10 more

Abstract read
In one paragraph

Article in Neuro-oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Alexa N SiskarDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Emily HanzlikDepartment of Pediatric Medicine, St. Jude Children's Research Hospital, Memphis, TN, USA.
Maria F CardenasDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Mohammad K EldomeryDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Soniya PintoDepartment of Radiology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Christopher L TinkleDepartment of Radiation Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Qunyu ZhangDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Xiaoyu LiDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Tong LinDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Sandeep K DhandaDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Gerald ReisMemorial Healthcare System, Hollywood, FL, USA.
Daphne LiPediatric Neurosurgery, Advocate Children's Hospital, Park Ridge, IL, USA.
Ravi RaghavanDepartment of Pathology, Loma Linda University Medical Center, Loma Linda, CA, USA.
Alexander VortmeyerDepartment of Pathology, University of Mississippi Medical Center, Jackson, MS, USA.
Matthias A KarajannisDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Giles W RobinsonDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Arzu Onar-ThomasDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-1005-2413
Patrick R BlackburnDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.
David A WheelerDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jason ChiangDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-3623-8996

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
The DNA Damage Response and Tumorigenesis in the BrainP01CA096832 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI BAKER, SUZANNE J. · 2003 to 2025
$38.0M
American Lebanese Syrian Associated CharitiesMemorial Sloan Kettering Cancer CenterNCI NIH HHS P01 CA096832NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA021765NCI NIH HHS P30CA021765NCI Program Project P01CA096832NIHSt. Jude Comprehensive Cancer CenterV Foundation
6 · The paper itself

Abstract

backgroundFOXR2 activation is regarded as pathognomonic for CNS neuroblastoma (NB). However, a comprehensive understanding of the landscape for CNS tumors exhibiting FOXR2 activation is lacking.

methodsHistopathologic, molecular, imaging, and clinical data of 42 CNS tumors with FOXR2 overexpression identified through screening institutional datasets and published institutional cases were analyzed.

resultsAmong the 42 tumors, 21 (50.0%) were high-grade gliomas (HGGs), and 18 (42.9%) were embryonal tumors. The HGGs included ten H3 K27M-mutant diffuse midline gliomas (DMGs) and eight radiation-associated tumors. The embryonal tumors included 11 CNS NBs and six pineoblastomas (PBs). FOXR2 expression was similar between CNS NB and other tumor types (P = 0.82). HGGs with FOXR2 overexpression, unlike NBs and PBs, displayed diverse concomitant genetic alterations. The most common mechanisms of FOXR2 activation involved structural alterations causing promoter donation and enhancer hijacking from active genes essential for brain development, followed by alternative promoter activation or truncated LINE-1 retrotransposition. The preferential activation mechanism varied by tumor type. All but two aberrant FOXR2 transcripts incorporated non-canonical, non-coding exons. Gene set enrichment analysis demonstrated shared downstream effects of FOXR2 activation at the epigenome and transcriptome levels across tumor types. DMGs and PBs with FOXR2 overexpression were aggressive, with 0% 2-year overall survival, whereas CNS NBs responded well to combined chemotherapy and radiation.

conclusionsCNS tumors with FOXR2 overexpression manifest significant histological, molecular, imaging, and clinical diversity. While HGGs and PBs with FOXR2 overexpression demonstrated inferior prognosis, CNS NBs showed favorable outcomes. Integrating histologic and molecular diagnostic approaches is imperative for accurate prognostication and optimal therapeutic decision-making.

Indexed as

Biomarkers, TumorCentral Nervous System NeoplasmsForkhead Transcription FactorsGliomaNeuroblastomaAdolescentAdultChildChild, PreschoolFemaleFollow-Up StudiesGene Expression Regulation, NeoplasticHumansInfantMalePrognosisBiomarkers, TumorForkhead Transcription FactorsFOXR2 protein, humanalternative promoterCNS tumors with FOXR2 overexpressionLINE-1 retrotranspositionpatient outcomespromoter donation and enhancer hijacking

Identifiers

PMID40237561
PMCPMC12417820

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.