Evidence map›Paper›PMID 40236485›Full record

ArticleFrontiers in microbiology2025

Comparative genomic and phenotypic description of

Niokhor Dione, Kodjovi D Mlaga, Siyi Liang, Guillaume Jospin, Zara Marfori, Nancy Alvarado, Elisa Scarsella, Ruchita Uttarwar, Holly H Ganz

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Niokhor DioneAnimalBiome, Oakland, CA, United States.
Kodjovi D MlagaAnimalBiome, Oakland, CA, United States.
Siyi LiangAnimalBiome, Oakland, CA, United States.
Guillaume JospinAnimalBiome, Oakland, CA, United States.
Zara MarforiAnimalBiome, Oakland, CA, United States.
Nancy AlvaradoAnimalBiome, Oakland, CA, United States.
Elisa ScarsellaAnimalBiome, Oakland, CA, United States.
Ruchita UttarwarAnimalBiome, Oakland, CA, United States.
Holly H GanzAnimalBiome, Oakland, CA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Methods: We used culturomic methods to isolate four Results and discussion: All strains exhibited similar enzymatic activities and resistance to clindamycin, erythromycin, and metronidazole. The pangenome analysis revealed that most missing gene orthologs are related to motility followed by metabolism, including synthetases, reductases, phosphatases, permeases, transferases, and epimerases, as well as structural genes like efflux pumps and transporters. Phylogroup typing using the ClermonTyping method identified two main groups within the

Indexed as

canine microbiomeculturomicsEscherichia ruysiaetaxono-genomicwhole genome sequencing

Identifiers

PMID40236485
PMCPMC11997573

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.