Evidence map›Paper›PMID 40236425›Full record

ArticlemedRxiv : the preprint server for health sciences2025

Current Limitations of Electronic Health Record Systems in Supporting Pragmatic Clinical Trials: Insights from the eMERGE Consortium.

Kavishwar B Wagholikar, Jennifer Allen Pacheco, Adam S Gordon, Atlas Khan, Bahram Namjou Khales, Barbara Benoit, Benjamin J Kerman, Chunhua Weng, Casey Ta, Cynthia A Prows and 33 more

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Kavishwar B WagholikarMassachusetts General Hospital.
Jennifer Allen PachecoNorthwestern University Feinberg School of Medicine.
Adam S GordonCenter for Genetic Medicine, Northwestern University.
Atlas KhanVagelos College of Physicians & Surgeons, Columbia University.
Bahram Namjou KhalesCincinnati Children's Hospital Medical Center.
Barbara BenoitMass General Brigham Inc.
Benjamin J KermanBrigham and Women's Hospital and Harvard Medical School.
Chunhua WengColumbia University Irving Medical Center.
Casey TaColumbia University.
Cynthia A ProwsChildren's Hospital Medical Center.
Robert JohnsonThe University of Alabama at Birmingham.
Dan M RodenVanderbilt University School of Medicine.
David CrosslinUniversity of Washington.
Elizabeth M McNallyNorthwestern University.
Elizabeth W KarlsonBrigham and Women's Hospital Department of Medicine.
Frank MentchThe Children's Hospital of Philadelphia Center for Applied Genomics.
Gail P JarvikUniversity of Washington Medical Center.
Georgia L WiesnerVanderbilt University.
Hakon HakonarsonPerelman School of Medicine of the University of Pennsylvania.
James J CiminoUniversity of Alabama-Birmingham.
Jeritt G ThayerChildren's Hospital of Philadelphia.
Jordan W SmollerMassachusetts General Hospital.
Jodell E LinderVanderbilt University Medical Center.
John ConnollyThe Children's Hospital of Philadelphia Center for Applied Genomics.
Josh F PetersonVanderbilt University Medical Center.
Josh CortopassiUniversity of Alabama at Birmingham Health System Authority.
Krzysztof KirylukColumbia University.
Marwan HamedMayo Foundation for Medical Education and Research.
Mary MaradikNorthwestern University Feinberg School of Medicine.
Megan J PuckelwartzNorthwestern University.
Mohammadreza NaderianMayo Clinic, Rochester, MN.
Nephi WaltonNational Institutes of Health.
Nita LimdiThe University of Alabama at Birmingham.
Devi Priyanka MaripuriChildren's Hospital of Philadelphia.
Theresa WalunasNorthwestern University.
Vivian GainerMass General Brigham Inc.
Yuan LuoNorthwestern University Feinberg School of Medicine.
Cong LiuBoston Children's Hospital.
Eimear E KennyIcahn School of Medicine at Mount Sinai.
Angelica EspinozaNorthwestern University Feinberg School of Medicine.
Robb RowleyNational Institutes of Health.
Wei-Qi WeiVanderbilt University Medical Center.
Shawn N MurphyMass General Brigham Inc.

Funding

The eMERGE Risk Assessment Network - Coordinating CenterU01HG011166 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Niall John Lennon, Joseph F. Peterson · 2020 to 2026
$16.8M
Genomic Basis of Susceptibility to COVID-19 Infection and its ComplicationsU01HG006379 · NHGRI · MAYO CLINIC ROCHESTER · PI Richard R. Sharp · 2011 to 2026
$16.5M
Finding Genomic Profiles of COVID-19 Phenotypes from the EHRU01HG008685 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI ELIZABETH W KARLSON, Matthew S Lebo · 2015 to 2026
$13.6M
Variation, Function, and Disease Supplement ProgramU01HG008657 · NHGRI · UNIVERSITY OF WASHINGTON · PI David Russell Crosslin, Gail Pairitz Jarvik · 2015 to 2026
$13.4M
OMOP information model for eMERGE phenotypingU01HG008680 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, GEORGE M HRIPCSAK · 2015 to 2026
$13.3M
Genomic risk in clinic care to promote health equity in New York City patientsU01HG011176 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI NOURA SERENE ABUL-HUSN, Eimear Elizabeth Kenny · 2020 to 2026
$10.4M
Utilizing Polygenic Risk to Understand and Improve Outcomes: A Model For Overturning Health Disparities Through Minority-Enriched Genomics HealthcareU01HG011175 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI Hakon Hakonarson · 2020 to 2026
$10.3M
Integrating Genomic Risk Assessment for Disease Management in a Clinical PopulationU01HG011167 · NHGRI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI JAMES J CIMINO, NITA A LIMDI · 2020 to 2026
$9.3M
Northwestern Genomic Risk Assessment and Management ProgramU01HG011169 · NHGRI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI REX L CHISHOLM, Elizabeth M McNally · 2020 to 2026
$7.4M
Polygenic Risk Scores for Healthier African American FamiliesU01HG011172 · NHGRI · CINCINNATI CHILDRENS HOSP MED CTR · PI Leah Claire Kottyan, LISA J MARTIN · 2020 to 2026
$7.2M
Vanderbilt Genome-Electronic Records (VGER) ProjectU01HG011181 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DAN M RODEN, Digna R Velez Edwards · 2020 to 2026
$7.0M
A framework to stratify patient cohorts for clinical managementR01HL151643 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI WAGHOLIKAR, KAVISHWAR B. · 2020 to 2024
$4.1M
NHGRI NIH HHS U01 HG006379NHGRI NIH HHS U01 HG008657NHGRI NIH HHS U01 HG008680NHGRI NIH HHS U01 HG008685NHGRI NIH HHS U01 HG011166NHGRI NIH HHS U01 HG011167NHGRI NIH HHS U01 HG011169NHGRI NIH HHS U01 HG011172NHGRI NIH HHS U01 HG011175NHGRI NIH HHS U01 HG011176NHGRI NIH HHS U01 HG011181NHLBI NIH HHS R01 HL151643NIDDK NIH HHS K25 DK128563
6 · The paper itself

Abstract

Pragmatic clinical trials (PCTs) evaluate interventions in real-world settings, often using electronic health records (EHRs) for efficient data collection. We report on the challenges in performing EHR analysis of healthcare provider orders in a PCT within the eMERGE consortium, which investigates the impact of reporting genome-informed risk assessments (GIRA) to over 25,000 patients across 10 academic medical centers. Clinical informaticians conducted a landscape analysis to identify approaches for evaluating the outcomes of GIRA reporting through the EHR. Of 98 identified outcomes, 54 (55.1%) were determined to be difficult to extract because they involved provider orders, which are typically documented in free text or proprietary formats within the EHR and only mapped to standardized codes after the service is completed. These findings highlight a critical barrier in using EHRs to support PCTs. The authors recommend closer collaboration between clinicians and informaticians, improved EHR systems that support standardized order entry, and future use of machine learning to automate analysis of provider behavior in clinical trials.

Identifiers

PMID40236425
PMCPMC11998813

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.