Evidence map›Paper›PMID 40234758›Full record

ArticleBMC infectious diseases2025

Unraveling relevant cross-waves pattern drifts in patient-hospital risk factors among hospitalized COVID-19 patients using explainable machine learning methods.

Fernanda Cristina Barbosa Lana, Carolina Coimbra Marinho, Bruno Barbosa Miranda de Paiva, Lucas Rocha Valle, Guilherme Fonseca do Nascimento, Leonardo Chaves Dutra da Rocha, Marcelo Carneiro, Joanna d'Arc Lyra Batista, Fernando Anschau, Pedro Gibson Paraiso and 6 more

Abstract readMulticenter Study
In one paragraph

Article in BMC infectious diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Fernanda Cristina Barbosa LanaUniversidade Federal de Minas Gerais, Av. Presidente Antônio Carlos, Belo Horizonte, 6627, Brazil. fernandacblana@gmail.com.
Carolina Coimbra MarinhoDepartment of Internal Medicine, Medical School & Telehealth Center, University Hospital, Universidade Federal de Minas Gerais, Av. Professor Alfredo Balena, Belo Horizonte, 110, Brazil.
Bruno Barbosa Miranda de PaivaComputer Science Department, Universidade Federal de Minas Gerais, Av. Presidente Antônio Carlos, Belo Horizonte, 6627, Brazil.
Lucas Rocha ValleUniversidade Federal de Minas Gerais, Av. Presidente Antônio Carlos, Belo Horizonte, 6627, Brazil.
Guilherme Fonseca do NascimentoUniversidade Federal de São João del-Rei. Praça Dom Helvécio, São João del-Rei, 74, Brazil.
Leonardo Chaves Dutra da RochaUniversidade Federal de São João del-Rei. Praça Dom Helvécio, São João del-Rei, 74, Brazil.
Marcelo CarneiroHospital Santa Cruz. R. Fernando Abott, Santa Cruz do Sul, 174, Brazil.
Joanna d'Arc Lyra BatistaHospital Regional do Oeste. R. Florianópolis, Chapecó, 1448 E, Brazil.
Fernando AnschauHospital Nossa Senhora da Conceição, Av. Francisco Trein, Porto Alegre, 326, Brazil.
Pedro Gibson ParaisoInstituto Orizonti. Praça Engenheiro Flávio Gutierrez, Belo Horizonte, Brazil.
Frederico BartolazziHospital Santo Antônio, Praça Dr. Márcio Carvalho Lopes Filho, Curvelo, 501, Brazil.
Christiane Corrêa Rodrigues CiminiHospital Santa Rosália, R. Dr. Onofre, 575, Centro, Teófilo Otoni, Brazil.
Alexandre Vargas SchwarzboldDepartment of Internal Medicine, Universidade Federal de Santa Maria, Santa Maria, Brazil.
Danyelle Romana Alves RiosUniversidade Federal de São, João del-Rei/ Campus Centro Oeste Dona Lindu, Divinópolis, Brazil.
Marcos André GonçalvesComputer Science Department, Universidade Federal de Minas Gerais, Av. Presidente Antônio Carlos, Belo Horizonte, 6627, Brazil.
Milena Soriano MarcolinoDepartment of Internal Medicine, Medical School & Telehealth Center, University Hospital, Universidade Federal de Minas Gerais, Av. Professor Alfredo Balena, Belo Horizonte, 110, Brazil.

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 134878/2023-0Conselho Nacional de Desenvolvimento Científico e Tecnológico 310561/2021-3
6 · The paper itself

Abstract

backgroundSeveral studies explored factors related to adverse clinical outcomes among COVID-19 patients but lacked analysis of the impact of the temporal data shifts on the strength of association between different predictors and adverse outcomes. This study aims to evaluate factors related to patients and hospitals in the prediction of in-hospital mortality, need for invasive mechanical ventilation (IMV), and intensive care unit (ICU) transfer throughout the pandemic waves.

methodsThis multicenter retrospective cohort included COVID-19 patients from 39 hospitals, from March/2020 to August/2022. The pandemic was divided into waves: 10/03/2020-14/11/2020 (first), 15/11/2020-25/12/2021 (second), 26/12/2021-03/08/2022 (third). Patient-related factors included clinical, demographic, and laboratory data, while hospital-related factors covered funding sources, accreditation, academic status, and socioeconomic characteristics. Shapley additive explanation (SHAP) values derived from the predictions of a light gradient-boosting machine (LightGBM) model were used to assess potential risk factors for death, IMV and ICU.

resultsOverall, 16,958 adult patients were included (median age 59 years, 54.7% men). LightGBM achieved competitive effectiveness metrics across all periods. Temporal drifts were observed due to a decrease in various metrics, such as the recall for the positive class [ICU: 0.4211 (wave 1) to 0.1951 (wave 3); IMV: 0.2089 (wave 1) to 0.0438 (wave 3); death: 0.2711 (wave 1) to 0.1175 (wave 3)]. Peripheral arterial oxygen saturation to the fraction of inspired oxygen ratio (SatO

conclusionData drifts were observed in all scenarios, affecting potential predictive capabilities of explainable machine learning methods. Upon admission, SatO CLINICAL TRIAL NUMBER: Not applicable.

Indexed as

COVID-19Machine LearningAdultAgedFemaleHospitalizationHospital MortalityHospitalsHumansIntensive Care UnitsMaleMiddle AgedRespiration, ArtificialRetrospective StudiesRisk FactorsSARS-CoV-2COVID-19Critical care outcomesMachine learningMortalityRisk factorsSocioeconomic factors

Identifiers

PMID40234758
PMCPMC12001466

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.