Evidence map›Paper›PMID 40234396›Full record

ArticleNature communications2025

Structure of human MUTYH and functional profiling of cancer-associated variants reveal an allosteric network between its [4Fe-4S] cluster cofactor and active site required for DNA repair.

Carlos H Trasviña-Arenas, Upeksha C Dissanayake, Nikole Tamayo, Mohammad Hashemian, W Jonathan Lin, Merve Demir, Nallely Hoyos-Gonzalez, Andrew J Fisher, G Andrés Cisneros, Martin P Horvath and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Structural Basis for Nucleobase Activation by the Adenine DNA Glycosylase MutY.Chembiochem : a European journal of chemical biology · 2026
    Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Carlos H Trasviña-ArenasDepartment of Chemistry, University of California, Davis, CA, USA.
Upeksha C DissanayakeDepartment of Chemistry and Biochemistry, University of Texas at Dallas, Richardson, TX, USA.
Nikole TamayoDepartment of Chemistry, University of California, Davis, CA, USA.
Mohammad HashemianDepartment of Chemistry, University of California, Davis, CA, USA.
W Jonathan LinDepartment of Chemistry, University of California, Davis, CA, USA.
Merve DemirDepartment of Chemistry, University of California, Davis, CA, USA.
Nallely Hoyos-GonzalezDepartment of Chemistry, University of California, Davis, CA, USA.
Andrew J FisherDepartment of Chemistry, University of California, Davis, CA, USA.ORCID http://orcid.org/0000-0003-3488-6594
G Andrés CisnerosDepartment of Chemistry and Biochemistry, University of Texas at Dallas, Richardson, TX, USA. andres@utdallas.edu.ORCID http://orcid.org/0000-0001-6629-3430
Martin P HorvathSchool of Biological Sciences, University of Utah, Salt Lake City, UT, USA. martin.horvath@utah.edu.ORCID http://orcid.org/0000-0003-3057-9722
Sheila S DavidDepartment of Chemistry, University of California, Davis, CA, USA. ssdavid@ucdavis.edu.ORCID http://orcid.org/0000-0001-5873-7935

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Gregory L Hura · 2017 to 2026
$28.6M
RECOGNITION AND REPAIR OF MISMATCHED DNA BY MUTYR01CA067985 · NCI · UNIVERSITY OF UTAH · PI DAVID, SHEILA SUE · 2000 to 2025
$5.6M
Theory and Simulation of DNA Repair Enzymes; Mechanism, Structure and FunctionR01GM108583 · NIGMS · WAYNE STATE UNIVERSITY · PI CISNEROS, GERARDO ANDRES · 2014 to 2022
$2.9M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Supplement:High-throughput screening and structure-guided optimization of oligonucleotides for site-directed RNA editing by ADARsR01GM149799 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ANDREW J FISHER · 2023 to 2026
$1.4M
Computational Simulations of DNA Transaction Enzymes - Application and DevelopmentR35GM151951 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI Gerardo Andres Cisneros · 2024 to 2026
$1.2M
A Fast Pixel-Array Pilatus 2M Detector for Automated Macromolecular Crystallography Data CollectionS10OD026941 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADAMS, PAUL DAVID · 2019 to 2019
$563k
National Science Foundation (NSF) CHE-2039752NCI NIH HHS R01 CA067985NIGMS NIH HHS P30 GM124165NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM108583NIGMS NIH HHS R01 GM149799NIGMS NIH HHS R35 GM151951NIH HHS S10 OD021527NIH HHS S10 OD026941NSF | Directorate for Mathematical & Physical Sciences | Division of Chemistry (CHE) CHE-1905249NSF | Directorate for Mathematical & Physical Sciences | Division of Chemistry (CHE) CHE-2204229U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA069785U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM108583U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM124165U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM124169U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM151951U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) S100D021527U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) S100D026941
6 · The paper itself

Abstract

MUTYH is a clinically important DNA glycosylase that thwarts mutations by initiating base-excision repair at 8-oxoguanine (OG):A lesions. The roles for its [4Fe-4S] cofactor in DNA repair remain enigmatic. Functional profiling of cancer-associated variants near the [4Fe-4S] cofactor reveals that most variations abrogate both retention of the cofactor and enzyme activity. Surprisingly, R241Q and N238S retained the metal cluster and bound substrate DNA tightly, but were completely inactive. We determine the crystal structure of human MUTYH bound to a transition state mimic and this shows that Arg241 and Asn238 build an H-bond network connecting the [4Fe-4S] cluster to the catalytic Asp236 that mediates base excision. The structure of the bacterial MutY variant R149Q, along with molecular dynamics simulations of the human enzyme, support a model in which the cofactor functions to position and activate the catalytic Asp. These results suggest that allosteric cross-talk between the DNA binding [4Fe-4S] cofactor and the base excision site of MUTYH regulate its DNA repair function.

Indexed as

DNA GlycosylasesDNA RepairIron-Sulfur ProteinsNeoplasmsAllosteric RegulationCatalytic DomainCrystallography, X-RayDNAGuanineHumansMolecular Dynamics SimulationMutation8-hydroxyguanineDNADNA GlycosylasesGuanineIron-Sulfur ProteinsmutY adenine glycosylase

Identifiers

PMID40234396
PMCPMC12000561

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.