Evidence map›Paper›PMID 40232741›Full record

ArticleJournal of chemical information and modeling2025

Investigating Statistical Conditions of Coevolutionary Signals that Enable Algorithmic Predictions of Protein Partners.

José Fiorote, João Alves, Letícia Stock, Werner Treptow

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

José FioroteLaboratório de Biologia Teórica e Computacional (LBTC), Universidade de Brasília, Brasilia, DF 70910-900, Brasil.
João AlvesLaboratório de Biologia Teórica e Computacional (LBTC), Universidade de Brasília, Brasilia, DF 70910-900, Brasil.ORCID 0000-0002-4331-0266
Letícia StockBen May Department for Cancer Research, University of Chicago, Chicago, Illinois 60637, United States.ORCID 0000-0002-6302-1373
Werner TreptowLaboratório de Biologia Teórica e Computacional (LBTC), Universidade de Brasília, Brasilia, DF 70910-900, Brasil.ORCID 0000-0003-4564-3205

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study examines the statistical conditions of coevolutionary signals that allow algorithmic predictions of protein partners based on amino acid sequences rather than 3D structures. It introduces a Markov stochastic model that predicts the number of correct protein partners based on coevolutionary information. The model defines state probabilities using a Poisson mixture of normal distributions, with key parameters including the total number of protein sequences

Indexed as

AlgorithmsEvolution, MolecularProteinsAmino Acid SequenceMarkov ChainsStochastic ProcessesProteins

Identifiers

PMID40232741
PMCPMC12042258

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.