Evidence map›Paper›PMID 40231412›Full record

ArticleBiochemistry2025

Beyond the β-α-β Fold: Characterization of a SnoaL Domain in the Tautomerase Superfamily.

Trevor R Melkonian, Nemanja Vuksanovic, Maria D Person, Tzu-Yu Chen, Wei-Chen Chang, Karen N Allen, Christian P Whitman

Abstract read
In one paragraph

Article in Biochemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Trevor R MelkonianDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0001-7566-1346
Nemanja VuksanovicDepartment of Chemistry, Boston University, Boston, Massachusetts 02215, United States.ORCID 0000-0003-2883-6312
Maria D PersonCenter for Biomedical Research Support, College of Pharmacy, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0001-8161-9339
Tzu-Yu ChenDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Wei-Chen ChangDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.ORCID 0000-0002-2341-9846
Karen N AllenDepartment of Chemistry, Boston University, Boston, Massachusetts 02215, United States.ORCID 0000-0001-7296-0551
Christian P WhitmanDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0002-8231-2483

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
Structural and functional characterization of glycosyltransferases in the Campylobacter concisus N-linked glycoconjugate biosynthetic pathwayF32GM146421 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI VUKSANOVIC, NEMANJA · 2023 to 2024
$146k
NIGMS NIH HHS F32 GM146421NIGMS NIH HHS R01 GM129325
6 · The paper itself

Abstract

Tautomerase superfamily (TSF) members are constructed from a single β-α-β unit or two consecutively joined β-α-β units, and most have a catalytic Pro1. This pattern prevails throughout the superfamily consisting of more than 11,000 members where homo- or heterohexamers are localized in the 4-oxalocrotonate tautomerase (4OT)-like subgroup and trimers are found in the other four subgroups except for a small subset of 4OT trimers, symmetric and asymmetric, that are found in the 4OT-like subgroup. During a sequence similarity network (SSN) update, a small cluster of sequences (117 sequences) was discovered in the 4OT-like subgroup that begins with Pro1. These sequences consist of a 4OT-like domain fused to a SnoaL domain at the C-terminus (except for one), as annotated in the UniProt database. The

Indexed as

IsomerasesAmino Acid SequenceCatalytic DomainModels, MolecularProtein DomainsProtein Folding4-oxalocrotonate tautomeraseIsomerases

Identifiers

PMID40231412
PMCPMC13010277

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.