Evidence map›Paper›PMID 40229716›Full record

ArticleBMC genomics2025

Integrated transcriptome and metabolome analysis reveals the impacts of prolonged light exposure on starch and protein content in maize kernels.

Kangni Zhang, Lina Wei, Jingpeng Geng, Weimin Zhan, Yankun Li, Yong Shi, Yanpei Zhang, Shizhan Chen, Jianping Yang

Abstract read
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kangni ZhangState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China.
Lina WeiState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China.
Jingpeng GengState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China.
Weimin ZhanState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China.
Yankun LiState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China.
Yong ShiState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China.
Yanpei ZhangState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China. zhangyanpei@henau.edu.cn.
Shizhan ChenState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China. chenshizhan1211@163.com.
Jianping YangState Key Laboratory of Wheat and Maize Crop Science, College of Agronomy, Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, Zhengzhou, 450002, China. jpyang@henau.edu.cn.

Funding

he Natural Science Foundation of Henan Province XJ2023000701Lhasa Regional Science and Technology Collaborative Innovation Project in 2022 QYXTZX-LS2022-01the Major Science and Technology Project of the Science and Technology of the Xizang Autonomous Region XZ202401ZY0072the National Natural Science Foundation of China 32472053
6 · The paper itself

Abstract

backgroundThe light environment significantly influences crop growth, development, quality, and yield, particularly in controlled-environment agriculture. Recent advances in artificial lighting technology have allowed growers to precisely control the light environment in terms of duration, spectrum, and intensity. Starch and protein are the most significant nutritional constituents of maize kernels. However, little is known about the effects of the light environment on starch and protein content in maize kernels. Therefore, we investigated the effects of natural light and supplemental exposure to blue (B), far-red (FR), and red (R) light on starch and protein content in kernels of the inbred maize line B73.

resultsExposure to supplemental B, FR, or R light resulted in significant increases in starch content but decreases in protein content. Notably, protein content was lowest under B light. Substantial proportions of genes (5.03-75.23%) and metabolites (46.89-85.64%) were regulated by different wavelengths of light. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses, as well as weighted gene co-expression network analysis (WGCNA), revealed that differentially expressed genes (DEGs) under B, FR, and R light were involved in pathways related to starch and protein synthesis. KEGG metabolomic analysis showed that differentially abundant metabolites (DAMs) were primarily associated with histidine, D-amino acid, cysteine, and methionine metabolism. Nine DEGs related to starch synthesis were identified as potential candidates for investigating the effects of light quality on starch synthesis, and 14 DEGs related to protein synthesis provided evidence for the influence of light quality on protein synthesis in maize.

conclusionsThis study identified the regulatory network governing starch and protein content in B73 maize kernels under different light conditions, contributing to a deeper understanding of how light quality affects the nutritional components of maize kernels.

Indexed as

LightMetabolomePlant ProteinsStarchTranscriptomeZea maysGene Expression ProfilingGene Expression Regulation, PlantSeedsPlant ProteinsStarchLight qualityMaizeMetabolomeProteinStarchTranscriptome

Identifiers

PMID40229716
PMCPMC11998427

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.