Evidence map›Paper›PMID 40229318›Full record

ArticleScientific reports2025

Structural analysis shows the mode of inhibition for Staphylococcus aureus lipase by antipsychotic penfluridol.

Julia Kitadokoro, Takatsugu Hirokawa, Masayuki Kamo, Naoki Furubayashi, Yukiko Okuno, Takaaki Hikima, Masaki Yamamoto, Koji Inaka, Katsumi Maenaka, Shigeki Kamitani and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Julia KitadokoroFaculty of Molecular Chemistry and Engineering, Graduate School of Science and Technology, Kyoto Institute of Technology, Hashigami-cho, Matsugasaki, Sakyo-ku, Kyoto, 606-8585, Japan.
Takatsugu HirokawaTransborder Medical Research Center, University of Tsukuba, Tsukuba, Ibaraki, 305-8575, Japan.
Masayuki KamoMARUWA Foods and Biosciences, Inc., 170-1, Tsutsui-cho, Yamatokoriyama, Nara, 639-1123, Japan.
Naoki FurubayashiMARUWA Foods and Biosciences, Inc., 170-1, Tsutsui-cho, Yamatokoriyama, Nara, 639-1123, Japan.
Yukiko OkunoMedical Research Support Center, Graduate School of Medicine, Kyoto University, Yoshidakonoe, Sakyo-ku, Kyoto, 606-8501, Japan.
Takaaki HikimaSR Life Science Instrumentation Team, Life Science Research Infrastructure Group, Advanced Photon Technology Division, RIKEN SPring-8 Center, 1-1-1, Koto, Sayo-cho, Sayo-gun, Hyogo, 679-6148, Japan.
Masaki YamamotoSR Life Science Instrumentation Team, Life Science Research Infrastructure Group, Advanced Photon Technology Division, RIKEN SPring-8 Center, 1-1-1, Koto, Sayo-cho, Sayo-gun, Hyogo, 679-6148, Japan.
Koji InakaMARUWA Foods and Biosciences, Inc., 170-1, Tsutsui-cho, Yamatokoriyama, Nara, 639-1123, Japan.
Katsumi MaenakaLaboratory of Biomolecular Science, and Center for Research and Education on Drug Discovery, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo, Hokkaido, 060-0812, Japan.
Shigeki KamitaniDepartment of Nutrition, Graduate School of Human Life and Ecology, Osaka Metropolitan University, 3-7-30 Habikino, Habikino, Osaka, 583-8555, Japan.
Kengo KitadokoroFaculty of Molecular Chemistry and Engineering, Graduate School of Science and Technology, Kyoto Institute of Technology, Hashigami-cho, Matsugasaki, Sakyo-ku, Kyoto, 606-8585, Japan. kengo@kit.ac.jp.

Funding

Japanese Ministry of Education, Culture, Science, and Technology 24K10199
6 · The paper itself

Abstract

It is now well-established that Staphylococcus aureus can produce a range of toxin proteins, resulting in a spectrum of pathological conditions when it infects individuals with pre-existing medical conditions or immunocompromised. Among these, MRSA is one of the most prominent antimicrobial-resistant organisms and a significant cause of mortality in many patients. It has been demonstrated that Staphylococcus aureus lipase (SAL) is a vital factor in the proliferation of this bacterium. A combination of in silico screening and X-ray crystallography was employed to analyze inhibitors of SAL, and the results were highly significant. In silico screening identified a number of compounds, and the enzyme activity assay demonstrated that the antipsychotic drug penfluridol exhibited potent inhibitory activity against SAL. We have conducted co-crystallization of penfluridol and SAL on the ground and in space. The resulting co-crystals were subjected to data measurement using the synchrotron radiation facility at SPring-8, and the complex structure was determined. The crystal structure of the penfluridol-SAL complex was determined at 2.2 Å resolution, thereby providing the structural basis for developing new anti-infective agents that inhibit the growth of Staphylococcus aureus. These findings are anticipated to facilitate the development of compounds with potent inhibitory activity.

Indexed as

Antipsychotic AgentsBacterial ProteinsEnzyme InhibitorsLipaseStaphylococcus aureusCrystallography, X-RayModels, MolecularAntipsychotic AgentsBacterial ProteinsEnzyme InhibitorsLipase

Identifiers

PMID40229318
PMCPMC11997127

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.