Evidence map›Paper›PMID 40227881›Full record

ArticleACS chemical biology2025

Repurposing of the RIPK1-Selective Benzo[1,4]oxazepin-4-one Scaffold for the Development of a Type III LIMK1/2 Inhibitor.

Sebastian Mandel, Thomas Hanke, Sebastian Mathea, Deep Chatterjee, Hayuningbudi Saraswati, Benedict-Tilman Berger, Martin Peter Schwalm, Satoshi Yamamoto, Michiko Tawada, Terufumi Takagi and 12 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Sebastian MandelInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.
Thomas HankeInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0001-7202-9468
Sebastian MatheaInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0001-8500-4569
Deep ChatterjeeInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.
Hayuningbudi SaraswatiInstitute of Transfusion Medicine-Transfusion Centre, Johannes Gutenberg University Medical Center, 55131 Mainz, Germany.
Benedict-Tilman BergerInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-3314-2617
Martin Peter SchwalmInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-1252-1829
Satoshi YamamotoNeuroscience Drug Discovery Unit, Research, Takeda Pharmaceutical Company Limited, 26-1 Muraoka-Higashi 2-chome, Fujisawa, Kanagawa 251-8555, Japan.
Michiko TawadaNeuroscience Drug Discovery Unit, Research, Takeda Pharmaceutical Company Limited, 26-1 Muraoka-Higashi 2-chome, Fujisawa, Kanagawa 251-8555, Japan.ORCID 0000-0002-1349-0059
Terufumi TakagiNeuroscience Drug Discovery Unit, Research, Takeda Pharmaceutical Company Limited, 26-1 Muraoka-Higashi 2-chome, Fujisawa, Kanagawa 251-8555, Japan.
Mahmood AhmedInaver Pharma Consulting, 2 Havelock Road, #07-12 Havelock 2, 059763 Singapore.
Sandra RöhmInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0003-3999-712X
Ana CorrioneroEnzymlogic, Qube Technology Park, C/Santiago Grisolía, 2, 28760 Madrid, Spain.
Patricia AlfonsoEnzymlogic, Qube Technology Park, C/Santiago Grisolía, 2, 28760 Madrid, Spain.
Maria BaenaEnzymlogic, Qube Technology Park, C/Santiago Grisolía, 2, 28760 Madrid, Spain.
Lewis ElsonInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.
Amelie MengeInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.
Andreas KrämerInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.
Raquel PereiraInstitute for Experimental Pediatric Hematology and Oncology, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany.ORCID 0000-0002-9863-6538
Susanne MüllerInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0003-2402-4157
Daniela S KrauseInstitute of Transfusion Medicine-Transfusion Centre, Johannes Gutenberg University Medical Center, 55131 Mainz, Germany.
Stefan KnappInstitute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max von Laue Str. 9, 60438 Frankfurt am Main, Germany.ORCID 0000-0001-5995-6494

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Benzoxazepinones have been extensively studied as exclusively selective RIP kinase 1 inhibitors. This scaffold binds to an allosteric pocket created by an αC-out/DFG-out conformation. This inactive conformation results in a large expansion of the kinase back pocket, a conformation that has also been reported for LIM kinases. Scaffold hopping is common in the design of orthosteric kinase inhibitors but has not been explored in the design of allosteric inhibitors, mainly due to the typically exclusive selectivity of type III inhibitors. Here, we hypothesized that the shared structural properties of LIMKs and RIPKs could lead to novel type III LIMK inhibitors using the benzoxazepinone scaffold. We report the discovery of a novel LIMK1/2 inhibitor that relies on this scaffold-based approach. The discovered compound

Indexed as

Drug RepositioningLim KinasesOxazepinesProtein Kinase InhibitorsReceptor-Interacting Protein Serine-Threonine KinasesHumansMolecular StructureStructure-Activity RelationshipLIMK1 protein, humanLIMK2 protein, humanLim KinasesOxazepinesProtein Kinase InhibitorsReceptor-Interacting Protein Serine-Threonine KinasesRIPK1 protein, human

Identifiers

PMID40227881
PMCPMC12090182

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.