Evidence map›Paper›PMID 40227120›Full record

ArticleThe Plant journal : for cell and molecular biology2025

Polyploidy-mediated variations in glutamate receptor proteins linked to Fusarium wilt resistance in upland cotton.

Stephen Parris, John T Lovell, Feng Ding, Zhenzhen Zhang, Jim Olvey, Mike Olvey, Jeremy Schmutz, Jane Grimwood, Avinash Sreedasyam, Sonika Kumar and 9 more

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Stephen ParrisDepartment of Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.
John T LovellGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Feng DingDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina, USA.
Zhenzhen ZhangDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina, USA.
Jim OlveyO&A Enterprises, Maricopa, Arizona, USA.
Mike OlveyO&A Enterprises, Maricopa, Arizona, USA.
Jeremy SchmutzGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.ORCID 0000-0001-8062-9172
Jane GrimwoodGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Avinash SreedasyamGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.ORCID 0000-0001-7336-7012
Sonika KumarDepartment of Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.
Zhigang LiDepartment of Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.
Priyanka JoshiDepartment of Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.
Jerry W JenkinsGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Christopher PlottGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Ada StewartGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Jenell WebberGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA.
Warwick N StillerCSIRO Agriculture, Narrabri, New South Wales, Australia.
Don C JonesCotton Incorporated, Cary, North Carolina, USA.
Christopher A SaskiDepartment of Plant and Environmental Sciences, Clemson University, Clemson, South Carolina, USA.ORCID 0000-0002-2780-4274

Funding

Regulation of Cryptosporidium DevelopmentP20GM146584 · NIGMS · CLEMSON UNIVERSITY · PI KERRY Scot SMITH · 2022 to 2026
$13.5M
Statistical Methods for Gene Regulatory Analysis From Single Cell Genomics DataP20GM139769 · NIGMS · CLEMSON UNIVERSITY · PI ANHOLT, ROBERT R. H, ARNO, GAVIN · 2021 to 2025
$10.8M
Cotton Incorporated 18-729Cotton Incorporated 18-753Cotton Incorporated 19-860Foundation for Food and Agriculture Research 23-000853National Institute for Food and Agriculture (USDA-NIFA) 2019-29915National Institute for Food and Agriculture (USDA-NIFA) 2021-11395NIGMS NIH HHS P20 GM139769NIGMS NIH HHS P20 GM146584
6 · The paper itself

Abstract

Cotton production in the US faces a serious threat from Fusarium oxysporum f. sp. vasinfectum race 4 (FOV4), a soil-borne fungus causing Fusarium wilt by infecting the roots and vascular system of susceptible cotton, leading to rapid wilting and death. Here, we investigate genetic mechanisms of resistance to FOV4 in the highly resistant upland cotton genotype "U1" using an early-generation segregating biparental population ("U1" × "CSX8308") with comprehensive genomic resources. Reference-grade genomic assemblies of the parents revealed minor structural variations between "U1" haplotypes, a high degree of collinearity at chromosome synteny and micro-synteny levels, and significant divergence from "CSX8308" with 8.9 million SNPs. QTL analysis identified significant markers on chromosomes D03 and A02 linked to reduced Fusarium wilt severity. Within these regions, two glutamate-receptor-like (GLR) genes showed structural variation and overlapped between translocated segments on A02 and D03, suggesting a rare but important reinforcing effect of parallel evolution between susceptible and resistant genotypes. Transcriptome profiles of "U1" under FOV4 infection reveal activation of calcium-binding proteins and transcription factors regulating plant hormones (ethylene, abscisic acid, jasmonic acid, and salicylic acid), along with enzymes involved in cell wall remodeling and phytoalexin production. Advancing cotton improvement depends on incorporating durable genetic disease resistance into high-yielding, high-quality cultivars.

Indexed as

Disease ResistanceFusariumGossypiumPlant DiseasesPlant ProteinsPolyploidyChromosomes, PlantGene Expression Regulation, PlantPolymorphism, Single NucleotideQuantitative Trait LociPlant Proteinsbiotic resistancecalcium channelFusarium oxysporum f. sp. vasinfectum race 4 (FOV4)glutamate receptor‐likeGossypium hirsutum

Identifiers

PMID40227120
PMCPMC11995877

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.