Evidence map›Paper›PMID 40227095›Full record

ArticleJournal of chemical theory and computation2025

Assessing Nonbonded Aggregates Populations: Application to the Concentration-Dependent IR O-H Band of Phenol.

J Pablo Gálvez, José Zúñiga, Javier Cerezo

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Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

J Pablo GálvezDepartamento de Química Física, Universidad de Murcia, 30100 Murcia, Spain.ORCID 0009-0003-7297-0401
José ZúñigaDepartamento de Química Física, Universidad de Murcia, 30100 Murcia, Spain.ORCID 0000-0003-4733-2611
Javier CerezoDepartamento de Química and Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain.ORCID 0000-0003-4820-4371

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this work, we present two alternative computational strategies to determine the populations of nonbonded aggregates. One approach extracts these populations from molecular dynamics (MD) simulations, while the other employs quantum mechanical partition functions for the most relevant minima of the multimolecular potential energy surfaces (PESs), identified by automated conformational sampling. In both cases, we adopt a common graph-theory-based framework, introduced in this work, for identifying aggregate conformations, which enables a consistent comparative assessment of both methodologies and provides insight into the underlying approximations. We apply both strategies to investigate phenol aggregates, up to the tetramer, at different concentrations in phenol/carbon tetrachloride mixtures. Subsequently, we simulate the concentration-dependent OH stretching IR region by averaging the harmonic Infrared (IR) spectra of aggregates using the populations predicted by each strategy. Our results indicate that the populations extracted from MD trajectories yield OH stretching signals that closely follow the experimental trends, outperforming the spectra from populations obtained by systematic conformational searches. Such a better performance of MD is attributed to a better description of the entropic contributions. Moreover, the proposed protocol not only successfully addresses a very challenging problem but also offers a benchmark to assess the accuracy of the intermolecular force fields.

Identifiers

PMID40227095
PMCPMC12161665

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.