Evidence map›Paper›PMID 40223733›Full record

ArticleJournal of medical virology2025

Phenotypic Characterization of Replication-Impaired Lenacapavir-Resistant HIV Clinical Isolates.

Sally Demirdjian, Vidula Naik, Nicolas Margot, Brie Falkard, Christian Callebaut

Abstract read
In one paragraph

Article in Journal of medical virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sally DemirdjianHIV Clinical Virology, Gilead Sciences Inc., Foster City, California, USA.ORCID 0000-0003-0659-0614
Vidula NaikHIV Clinical Virology, Gilead Sciences Inc., Foster City, California, USA.
Nicolas MargotHIV Clinical Virology, Gilead Sciences Inc., Foster City, California, USA.ORCID 0000-0002-0911-4237
Brie FalkardHIV Clinical Virology, Gilead Sciences Inc., Foster City, California, USA.
Christian CallebautHIV Clinical Virology, Gilead Sciences Inc., Foster City, California, USA.

Funding

This study was supported by Gilead Sciences Inc. which fully funded the studies.
6 · The paper itself

Abstract

Lenacapavir (LEN) is a potent, first-in-class long-acting HIV-1 capsid (CA) inhibitor, approved for treatment of people with multi-drug resistant HIV in combination with other antiretrovirals. In clinical studies with LEN, the CA resistance-associated mutations (RAMs) M66I, Q67H/K/N, K70H/N/R/S, N74D/H/K, A105S/T, and T107A/C/N/S were observed. Phenotypic analyses of these CA mutants were possible in single cycle (SC) PhenoSense Gag-Pro assays; however, most CA mutants exhibited severely impaired replication capacity (RC), rendering phenotyping with multicycle (MC) MT-2 cytopathic assays unsuccessful for many. Here, we developed and optimized a novel MC phenotyping assay using a Rev-dependent HIV reporter cell line, Rev-CEM-Luc/GFP (RevLun assay), to further characterize these replication-impaired LEN-resistant HIV CA mutants. HIV Gag-Protease fragments from patients' plasma samples with CA RAMs and associated site-directed mutants were cloned into the pXXLAI HIV molecular clone, and replicative viral supernatants were evaluated in MT-2 and RevLun MC assays, with readouts of cytopathic effect and reporter gene expression, respectively. Viruses were also evaluated in the SC assay. We successfully phenotyped CA mutants in RevLun that were noninfectious in MT-2 assay, including clinical isolates containing M66I in various genetic contexts and combinations of LEN RAMs. LEN susceptibility in the RevLun MC assay aligned with data in the SC PhenoSense Gag-Pro assay and MC MT-2 assay when available. All viruses with LEN RAMs remained sensitive to other HIV drug classes. Using a sensitive HIV-dependent reporter system enhanced our ability to assess the phenotypes of viruses with low RC, allowing for further investigation into LEN resistance and CA RAMs.

Indexed as

Anti-HIV AgentsDrug Resistance, ViralHIV-1HIV InfectionsNitrilesVirus ReplicationAcetamidesCell LineHumansIndazolesMutationPhenotypeAcetamidesAnti-HIV AgentsIndazoleslenacapavirNitrilescapsidcapsid resistance associated mutationsHIV‐1lenacapavirphenotyping

Identifiers

PMID40223733
PMCPMC11995365

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.