Evidence map›Paper›PMID 40223273›Full record

ReviewJournal of microbiology and biotechnology2025

Advancing Gut Microbiome Research: The Shift from Metagenomics to Multi-Omics and Future Perspectives.

So-Yeon Yang, Seung Min Han, Ji-Young Lee, Kyoung Su Kim, Jae-Eun Lee, Dong-Woo Lee

Abstract readReview
In one paragraph

Review in Journal of microbiology and biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Pharmacomicrobiomics-driven targeted drug delivery for precision microbiome modulation.Daru : journal of Faculty of Pharmacy, Tehran University of Medical Sciences · 2026
    Review
  4. Review
  5. Microbiome and chronic pelvic pain in women: a mini-review.Human reproduction (Oxford, England) · 2026
    Review
  6. Review
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Journal of microbiology and biotechnology · 2026
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

So-Yeon YangDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Seung Min HanDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Ji-Young LeeDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Kyoung Su KimDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Jae-Eun LeeDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.
Dong-Woo LeeDepartment of Biotechnology, Yonsei University, Seoul 03722, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gut microbiome, a dynamic and integral component of human health, has co-evolved with its host, playing essential roles in metabolism, immunity, and disease prevention. Traditional microbiome studies, primarily focused on microbial composition, have provided limited insights into the functional and mechanistic interactions between microbiota and their host. The advent of multi-omics technologies has transformed microbiome research by integrating genomics, transcriptomics, proteomics, and metabolomics, offering a comprehensive, systems-level understanding of microbial ecology and host-microbiome interactions. These advances have propelled innovations in personalized medicine, enabling more precise diagnostics and targeted therapeutic strategies. This review highlights recent breakthroughs in microbiome research, demonstrating how these approaches have elucidated microbial functions and their implications for health and disease. Additionally, it underscores the necessity of standardizing multi-omics methodologies, conducting large-scale cohort studies, and developing novel platforms for mechanistic studies, which are critical steps toward translating microbiome research into clinical applications and advancing precision medicine.

Indexed as

Gastrointestinal MicrobiomeHost Microbial InteractionsTranslational Research, BiomedicalHumansMetagenomicsMultiomicsPrecision MedicineGut microbiomehost-microbe interactionsmicrobiomebased therapeuticsmulti-omicspersonalized medicine

Identifiers

PMID40223273
PMCPMC12010094

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.