Evidence map›Paper›PMID 40223105›Full record

ArticleAnnals of clinical microbiology and antimicrobials2025

Novel strategies for vancomycin-resistant Enterococcus faecalis biofilm control: bacteriophage (vB_EfaS_ZC1), propolis, and their combined effects in an ex vivo endodontic model.

Toka A Hakim, Bishoy Maher Zaki, Dalia A Mohamed, Bob Blasdel, Mohamed A Gad, Mohamed S Fayez, Ayman El-Shibiny

Abstract read
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Toka A HakimCenter for Microbiology and Phage Therapy, Zewail City of Science and Technology, Giza, 12578, Egypt.
Bishoy Maher ZakiMicrobiology and Immunology Department, Faculty of Pharmacy, October University for Modern Sciences and Arts (MSA), Giza, 11787, Egypt.
Dalia A MohamedDepartment of Endodontics, Faculty of Dentistry, Suez Canal University, 4.5 Ring Road, Ismailia, 41522, Egypt.
Bob BlasdelVésale Bioscience, Vésale Pharmaceutica, 5310, Noville-Sur-Mehaigne, Belgium.
Mohamed A GadCenter for Microbiology and Phage Therapy, Zewail City of Science and Technology, Giza, 12578, Egypt.
Mohamed S FayezCenter for Microbiology and Phage Therapy, Zewail City of Science and Technology, Giza, 12578, Egypt.
Ayman El-ShibinyCenter for Microbiology and Phage Therapy, Zewail City of Science and Technology, Giza, 12578, Egypt. aelshibiny@zewailcity.edu.eg.

Funding

Academy of Scientific Research and Technology Round 8
6 · The paper itself

Abstract

backgroundEndodontic treatment failures are predominantly attributed to Enterococcus faecalis (E. faecalis) infection, a Gram-positive coccus. E. faecalis forms biofilms, resist multiple antibiotics, and can withstand endodontic disinfection protocols. Vancomycin-resistant strains, in particular, are challenging to treat and are associated with serious medical complications.

methodsA novel phage, vB_EfaS_ZC1, was isolated and characterized. Its lytic activity against E. faecalis was assessed in vitro through time-killing and biofilm assays. The phage's stability under various conditions was determined. Genomic analysis was conducted to characterize the phage and its virulence. The phage, propolis, and their combination were evaluated as an intracanal irrigation solution against a 4-week E. faecalis mature biofilm, using an ex vivo infected human dentin model. The antibiofilm activity was analyzed using a colony-forming unit assay, field emission scanning electron microscopy, and confocal laser scanning microscopy.

resultsThe isolated phage, vB_EfaS_ZC1, a siphovirus with prolate capsid, exhibited strong lytic activity against Vancomycin-resistant strains. In vitro assays indicated its effectiveness in inhibiting planktonic growth and disrupting mature biofilms. The phage remained stable under wide range of temperatures (- 80 to 60 °C), tolerated pH levels from 4 to 11; however the phage viability significantly reduced after UV exposure. Genomic analysis strongly suggests the phage's virulence and suitability for therapeutic applications; neither lysogeny markers nor antibiotic resistance markers were identified. Phylogenetic analysis clustered vB_EfaS_ZC1 within the genus Saphexavirus. The phage, both alone and in combination with propolis, demonstrated potent antibiofilm effects compared to conventional root canal irrigation.

conclusionPhage vB_EfaS_ZC1 demonstrates a promising therapy, either individually or in combination with propolis, for addressing challenging endodontic infections caused by E. faecalis.

Indexed as

BacteriophagesBiofilmsEnterococcus faecalisPropolisVancomycin-Resistant EnterococciAnti-Bacterial AgentsGram-Positive Bacterial InfectionsHumansVancomycinVancomycin ResistanceVirulenceAnti-Bacterial AgentsPropolisVancomycinAntibiofilmEndodontic treatmentIrrigationPhage therapyPropolisSaphexavirusVancomycin-resistant Enterococcus faecalis

Identifiers

PMID40223105
PMCPMC11995525

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.