Evidence map›Paper›PMID 40222749›Full record

ReviewEnvironmental microbiology2025

Wine Fermentation as a Model System for Microbial Ecology and Evolution.

Ignacio Belda, Sergio Izquierdo-Gea, Belen Benitez-Dominguez, Javier Ruiz, Jean C C Vila

Abstract readReview
In one paragraph

Review in Environmental microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Microbial biotechnology meets ecological theory: a unified framework to design industrial microbial consortia.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Review
  3. Modeling growth ofFrontiers in microbiology · 2026
    Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ignacio BeldaDepartment of Genetics, Physiology and Microbiology, Biology Faculty, Complutense University of Madrid, Madrid, Spain.ORCID https://orcid.org/0000-0002-2607-5049
Sergio Izquierdo-GeaDepartment of Genetics, Physiology and Microbiology, Biology Faculty, Complutense University of Madrid, Madrid, Spain.
Belen Benitez-DominguezDepartment of Genetics, Physiology and Microbiology, Biology Faculty, Complutense University of Madrid, Madrid, Spain.
Javier RuizDepartment of Genetics, Physiology and Microbiology, Biology Faculty, Complutense University of Madrid, Madrid, Spain.
Jean C C VilaDepartment of Biology, Stanford University, Stanford, USA.

Funding

Agencia Estatal de Investigación PID2019-105834GA-I00Agencia Estatal de Investigación PID2022-138343NB-I00Agencia Estatal de Investigación PRE2022-103063Center for Computational, Evolutionary and Human Genomics, Stanford University. Postdoc Fellowship to Jean CC VIlaSpanish Ministry of Science, Innovation and Universities FPU21/06830
6 · The paper itself

Abstract

In vitro microbial communities have proven to be invaluable model systems for studying ecological and evolutionary processes experimentally. However, it remains unclear whether quantitative insights obtained from these laboratory systems can be applied to complex communities assembling and evolving in their natural ecological context. To bridge the gap between the lab and the 'real-world', there is a need for laboratory model systems that better approximate natural and semi-natural ecosystems. Wine fermentation presents an ideal system for this purpose, balancing experimental tractability with rich ecological and evolutionary dynamics. In this perspective piece we outline the key features that make wine fermentation a fruitful model system for ecologists and evolutionary biologists. We highlight the diversity of environmentally mediated interactions that shape community dynamics during fermentation, the complex evolutionary history of wine microbial populations, and the opportunity to study the impact of complex ecologies on evolutionary dynamics. By integrating knowledge from both wine research and microbial ecology and evolution we aim to enhance understanding and foster collaboration between these fields.

Indexed as

BacteriaBiological EvolutionFermentationWineEcologyEcosystemMicrobiotaModels, Biologicalevolution/evolutionary processes/gene transfer/mutationfunctional diversitymicrobe: Microbe interactionsmicrobial communitiesmicrobial ecologysynthetic microbial communitiesyeasts

Identifiers

PMID40222749
PMCPMC12117253

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.