Evidence map›Paper›PMID 40220286›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2025

Detecting emergencies in patient portal messages using large language models and knowledge graph-based retrieval-augmented generation.

Siru Liu, Aileen P Wright, Allison B McCoy, Sean S Huang, Bryan Steitz, Adam Wright

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  13. Harnessing the power of large language models for clinical tasks and synthesis of scientific literature.Journal of the American Medical Informatics Association : JAMIA · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Siru LiuDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37212, United States.
Aileen P WrightDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37212, United States.
Allison B McCoyDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37212, United States.ORCID 0000-0003-2292-9147
Sean S HuangDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37212, United States.
Bryan SteitzDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37212, United States.
Adam WrightDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN 37212, United States.ORCID 0000-0001-6844-145X

Funding

Strategies for Engineering Reliable Value Sets (SERVS)R01LM013995 · NLM · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ADAM T WRIGHT · 2022 to 2026
$1.0M
Optimizing Clinical Decision Support Alerts Using Explainable Artificial Intelligence (XAI)R00LM014097 · NLM · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LIU, SIRU · 2023 to 2024
$498k
Integrative Data Science Approach to Advance Care Coordination of ADRD by Primary Care ProvidersK01AG083133 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Bryan Steitz · 2023 to 2026
$479k
NIA NIH HHS K01 AG083133NIH HHS R00LM014097-02NIH HHS R01LM013995-01NLM NIH HHS R00 LM014097NLM NIH HHS R01 LM013995
6 · The paper itself

Abstract

objectivesThis study aims to develop and evaluate an approach using large language models (LLMs) and a knowledge graph to triage patient messages that need emergency care. The goal is to notify patients when their messages indicate an emergency, guiding them to seek immediate help rather than using the patient portal, to improve patient safety. MATERIALS AND

methodsWe selected 1020 messages sent to Vanderbilt University Medical Center providers between January 1, 2022 and March 7, 2023. We developed four models to triage these messages for emergencies: (1) Prompt-Only: the patient message was input with a prompt directly into the LLM; (2) Naïve Retrieval Augmented Generation (RAG): provided retrieved information as context to the LLM; (3) RAG from Knowledge Graph with Local Search: a knowledge graph was used to retrieve locally relevant information based on semantic similarities; (4) RAG from Knowledge Graph with Global Search: a knowledge graph was used to retrieve globally relevant information through hierarchical community detection. The knowledge base was a triage book covering 225 protocols.

resultsThe RAG from Knowledge Graph model with global search outperformed other models, achieving an accuracy of 0.99, a sensitivity of 0.98, and a specificity of 0.99. It demonstrated significant improvements in triaging emergency messages compared to LLM without RAG and naïve RAG. DISCUSSION: The traditional LLM without any retrieval mechanism underperformed compared to models with RAG, which aligns with the expected benefits of augmenting LLMs with domain-specific knowledge sources. Our results suggest that providing external knowledge, especially in a structured manner and in community summaries, can improve LLM performance in triaging patient portal messages.

conclusionLLMs can effectively assist in triaging emergency patient messages after integrating with a knowledge graph about a nurse triage book. Future research should focus on expanding the knowledge graph and deploying the system to evaluate its impact on patient outcomes.

Indexed as

EmergenciesInformation Storage and RetrievalKnowledge BasesPatient PortalsTriageHumansLarge Language ModelsNatural Language Processingclinical decision supportknowledge graphlarge language modelmessage contentpatient-doctor communicationpatient portalprimary health careretrieval augmented generation

Identifiers

PMID40220286
PMCPMC12089757

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.