Evidence map›Paper›PMID 40217251›Full record

ArticleArthritis research & therapy2025

Neural network analysis as a novel skin outcome in a trial of belumosudil in patients with systemic sclerosis.

Ilayda Gunes, Elana J Bernstein, Shawn E Cowper, Gauri Panse, Niki Pradhan, Lucy Duran Camacho, Nicolas Page, Elizabeth Bundschuh, Alyssa Williams, Mary Carns and 10 more

Abstract read
In one paragraph

Article in Arthritis research & therapy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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1 citing paper in PubMed.

  1. Review
4 · The record

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5 · Who and what money

Authors and funding

20 authors.

Ilayda GunesDepartment of Internal Medicine, Section of Rheumatology, Allergy & Immunology, Yale School of Medicine, New Haven, USA.
Elana J BernsteinDepartment of Medicine, Division of Rheumatology, Columbia University Irving Medical Center, New York, USA.
Shawn E CowperDepartments of Dermatology and Pathology, Yale School of Medicine, New Haven, USA.
Gauri PanseDepartments of Dermatology and Pathology, Yale School of Medicine, New Haven, USA.
Niki PradhanDepartment of Medicine, Division of Rheumatology, Columbia University Irving Medical Center, New York, USA.
Lucy Duran CamachoDepartment of Internal Medicine, Section of Rheumatology, Allergy & Immunology, Yale School of Medicine, New Haven, USA.
Nicolas PageDepartment of Internal Medicine, Section of Rheumatology, Allergy & Immunology, Yale School of Medicine, New Haven, USA.
Elizabeth BundschuhDepartment of Internal Medicine, Section of Rheumatology, Allergy & Immunology, Yale School of Medicine, New Haven, USA.
Alyssa WilliamsDepartment of Internal Medicine, Section of Rheumatology, Allergy & Immunology, Yale School of Medicine, New Haven, USA.
Mary CarnsDepartment of Medicine, Division of Rheumatology, Northwestern University Feinberg School of Medicine, Chicago, USA.
Kathleen ArenDepartment of Medicine, Division of Rheumatology, Northwestern University Feinberg School of Medicine, Chicago, USA.
Sarah FantusDepartment of Medicine, Division of Rheumatology, Northwestern University Feinberg School of Medicine, Chicago, USA.
Elizabeth R VolkmannDavid Geffen School of Medicine, Division of Rheumatology, University of California, los Angeles, Los Angeles, USA.
Heather BukiriDavid Geffen School of Medicine, Division of Rheumatology, University of California, los Angeles, Los Angeles, USA.
Chase CorreiaDepartment of Medicine, Division of Rheumatology, Northwestern University Feinberg School of Medicine, Chicago, USA.
Vijaya B KolachalamaBoston University, Boston, USA.
F Perry WilsonClinical and Translational Research Accelerator, Yale School of Medicine, New Haven, USA.
Seamus MaweThe Jackson Laboratory, Bar Harbor, USA.
J Matthew MahoneyThe Jackson Laboratory, Bar Harbor, USA.
Monique HinchcliffDepartment of Internal Medicine, Section of Rheumatology, Allergy & Immunology, Yale School of Medicine, New Haven, USA. Monique.hinchcliff@yale.edu.

Funding

Career Development in Women's Health (CDWH)K12HD055884 · NICHD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI DUNAIF, ANDREA E · 2007 to 2016
$4.2M
Vasculopathy and Systemic Sclerosis-Associated Interstitial Lung DiseaseR01HL164758 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Elana J. Bernstein · 2022 to 2026
$3.5M
Pathogenic Wnt-beta catenin target genes in macrophages and fibrosisR01AR073270 · NIAMS · YALE UNIVERSITY · PI HINCHCLIFF, MONIQUE EVANGELINE · 2019 to 2023
$2.6M
Digital Cognitive Assessment of Preclinical Alzheimer's Disease and Related DementiasR01AG083735 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Rhoda Au, Vijaya B. Kolachalama · 2024 to 2026
$2.4M
Mechanisms of drug-coated balloon therapyR01HL159620 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI KOLACHALAMA, VIJAYA B. · 2021 to 2024
$2.1M
Cognitive heterogeneity in those with high Alzheimer's Disease RiskR01AG062109 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Rhoda Au, Vijaya B. Kolachalama · 2025 to 2026
$1.6M
Integrating high-throughput histology with systems genetics through causal graphical modelsR01GM141309 · NIGMS · JACKSON LABORATORY · PI MAHONEY, JOHN MATTHEW · 2022 to 2025
$1.5M
Screening Chest CT to Detect Interstitial Lung Disease in Systemic SclerosisK23AR075112 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BERNSTEIN, ELANA · 2019 to 2023
$794k
Molecular Biomarkers of Improvement for Patients with Systemic Sclerosis in an Open Label Trial of Mycophenolate MofetilR21AR068035 · NIAMS · DARTMOUTH COLLEGE · PI HINCHCLIFF, MONIQUE EVANGELINE, WHITFIELD, MICHAEL L · 2015 to 2016
$400k
Predictive Ability of Gene Expression Signatures In Skin as SSc BiomarkersK23AR059763 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HINCHCLIFF, MONIQUE EVANGELINE · 2013 to 2015
$390k
Department of Defense grant W81XWH-22-1-0163Kadmon Corporation LLC, a Sanofi company GR112287NATIONAL HEART, LUNG, & BLOOD INSTITUTE R01-HL159620NATIONAL HEART, LUNG, & BLOOD INSTITUTE R01-HL-164758NHLBI NIH HHS K23-AR-075112NHLBI NIH HHS R01 HL159620NHLBI NIH HHS R01 HL164758NIAMS NIH HHS K23 AR059763NIAMS NIH HHS K23 AR075112NIAMS NIH HHS R01 AR073270NIAMS NIH HHS R21 AR068035NIA NIH HHS R01 AG062109NIA NIH HHS R01 AG083735NIA NIH HHS R01-AG083735NICHD NIH HHS K12 HD055884NIGMS NIH HHS 1R01GM141309NIGMS NIH HHS R01 GM141309Scleroderma Research Foundation NIH NICHD K12 HD055884, NIAMS K23 AR059763, R21 AR068035, R01 AR073270
6 · The paper itself

Abstract

backgroundThe modified Rodnan skin score (mRSS), a measure of systemic sclerosis (SSc) skin thickness, is agnostic to inflammation and vasculopathy. Previously, we demonstrated the potential of neural network-based digital pathology applied to SSc skin biopsies as a quantitative outcome. Here, we leverage deep learning and histologic analyses of clinical trial biopsies to decipher SSc skin features 'seen' by artificial intelligence (AI).

methodsAdults with diffuse cutaneous SSc ≤ 6 years were enrolled in an open-label trial of belumosudil [a Rho-associated coiled-coil containing protein kinase 2 (ROCK2) inhibitor]. Participants underwent serial mRSS and arm biopsies at week (W) 0, 24 and 52. Two blinded dermatopathologists scored stained sections (e.g., Masson's trichrome, hematoxylin and eosin, CD3, α-smooth muscle actin) for 16 published SSc dermal pathological parameters. We applied our deep learning model to generate QIF signatures/biopsy and obtain 'Fibrosis Scores'. Associations between Fibrosis Score and mRSS (Spearman correlation), and between Fibrosis Score and mRSS versus histologic parameters [odds ratios (OR)], were determined.

resultsOnly ten patients were enrolled due to early study termination, and of those, five had available biopsies due to fixation issues. Median, interquartile range (IQR) for mRSS change (0-52 W) for the ten participants was -2 (-9-7.5) and for the five with biopsies was -2.5 (-11-7.5). The correlation between Fibrosis Score and mRSS was R = 0.3; p = 0.674. Per 1-unit mRSS change (0-52 W), histologic parameters with the greatest associated changes were (OR, 95% CI, p-value): telangiectasia (2.01, [(1.31-3.07], 0.001), perivascular CD3 + (0.99, [0.97-1.02], 0.015), and % of CD8 + among CD3 + (0.95, [0.89-1.01], 0.031). Likewise, per 1-unit Fibrosis Score change, parameters with greatest changes were (OR, p-value): hyalinized collagen (1.1, [1.04 - 1.16], < 0.001), subcutaneous (SC) fat loss (1.47, [1.19-1.81], < 0.001), thickened intima (1.21, [1.06-1.38], 0.005), and eccrine entrapment (1.14, [1-1.31], 0.046).

conclusionsBelumosudil was associated with non-clinically meaningful mRSS improvement. The histologic features that significantly correlated with Fibrosis Score changes (e.g., hyalinized collagen, SC fat loss) were distinct from those associated with mRSS changes (e.g., telangiectasia and perivascular CD3 +). These data suggest that AI applied to SSc biopsies may be useful for quantifying pathologic features of SSc beyond skin thickness.

Indexed as

Neural Networks, ComputerScleroderma, SystemicSkinAdultBiopsyFemaleHumansMaleMiddle Agedrho-Associated KinasesTreatment Outcomerho-Associated KinasesAlexNetArtificial intelligenceBelumosudilDeep Neural NetworkDermal fibrosisModified Rodnan skin scoreOutcome measureOutcomesSclerodermaSkin fibrosisSystemic sclerosis

Identifiers

PMID40217251
PMCPMC11987334

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.