Evidence map›Paper›PMID 40217121›Full record

ArticleNature structural & molecular biology2025

NUB1 traps unfolded FAT10 for ubiquitin-independent degradation by the 26S proteasome.

Connor Arkinson, Ken C Dong, Christine L Gee, Shawn M Costello, Aimee Chi Soe, Greg L Hura, Susan Marqusee, Andreas Martin

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Structures of the 26Science advances · 2026
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Connor ArkinsonCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-3665-2484
Ken C DongHoward Hughes Medical Institute, University of California, Berkeley, Berkeley, CA, USA.
Christine L GeeCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-2632-6418
Shawn M CostelloBiophysics Graduate Program, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-3926-8074
Aimee Chi SoeMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Greg L HuraMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-0501-8464
Susan MarquseeCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-7648-2163
Andreas MartinCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA, USA. a.martin@berkeley.edu.ORCID http://orcid.org/0000-0003-0923-3284

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Gregory L Hura · 2017 to 2026
$28.6M
ATP-Dependent Protein Unfolding and Translocation by the Eukaryotic ProteasomeR01GM094497 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARTIN, ANDREAS · 2011 to 2024
$3.7M
Sequence and Environmental Determinants of the Protein Energy LandscapeR35GM149319 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SUSAN MARQUSEE · 2023 to 2026
$1.7M
NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM094497NIGMS NIH HHS R35 GM149319
6 · The paper itself

Abstract

The ubiquitin-like modifier FAT10 targets hundreds of proteins in the mammalian immune system to the 26S proteasome for degradation. This degradation pathway requires the cofactor NUB1, yet the underlying mechanisms remain unknown. Here, we reconstituted a minimal in vitro system with human components and revealed that NUB1 uses the intrinsic instability of FAT10 to trap its N-terminal ubiquitin-like domain in an unfolded state and deliver it to the 26S proteasome for engagement, allowing the degradation of FAT10-ylated substrates in a ubiquitin-independent and p97-independent manner. Using hydrogen-deuterium exchange, structural modeling and site-directed mutagenesis, we identified the formation of an intricate complex with FAT10 that activates NUB1 for docking to the 26S proteasome, and our cryo-EM studies visualized the highly dynamic NUB1 complex bound to the proteasomal Rpn1 subunit during FAT10 delivery and the early stages of ATP-dependent degradation. These findings identified a previously unknown mode of cofactor-mediated, ubiquitin-independent substrate delivery to the 26S proteasome that relies on trapping partially unfolded states for engagement by the proteasomal ATPase motor.

Indexed as

Proteasome Endopeptidase ComplexUbiquitinsCryoelectron MicroscopyHumansModels, MolecularProtein BindingProteolysisUbiquitinATP dependent 26S proteaseProteasome Endopeptidase ComplexUBD protein, humanUbiquitinUbiquitins

Identifiers

PMID40217121
PMCPMC12285911

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.