Evidence map›Paper›PMID 40210926›Full record

ArticleScientific data2025

Epigenomic signatures of cis-regulatory elements in the developing mouse and pig forelimb.

Ismael Sospedra-Arrufat, Pedro Manuel Martínez-García, Alejandro Gil-Gálvez, Ana Alcaina-Caro, Juan J Tena, Gretel Nusspaumer, Javier Lopez-Rios

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ismael Sospedra-ArrufatCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, 41013, Seville, Spain.
Pedro Manuel Martínez-GarcíaCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, 41013, Seville, Spain.
Alejandro Gil-GálvezCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, 41013, Seville, Spain.
Ana Alcaina-CaroCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, 41013, Seville, Spain.ORCID http://orcid.org/0000-0002-7352-5890
Juan J TenaCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, 41013, Seville, Spain.ORCID http://orcid.org/0000-0001-8165-7984
Gretel NusspaumerCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, 41013, Seville, Spain.ORCID http://orcid.org/0000-0002-3870-0964
Javier Lopez-RiosCentro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, 41013, Seville, Spain. jloprio@upo.es.ORCID http://orcid.org/0000-0001-6731-3798

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cis-regulatory elements (CREs) orchestrate the spatiotemporal regulation of key transcriptional programs. These genomic regions-including promoters, enhancers, and insulators-play a crucial role during embryonic development, and their functional diversification is thought to contribute significantly to the morphological evolution of animal body plans. We performed chromatin immunoprecipitation for various histone modifications (H3K4me3, H3K27ac, and H3K4me1) from equivalent developmental stages of mouse (E11.5) and pig (day 23; D23) to identify active regulatory regions during forelimb development in both species. The overlap of these epigenomic signatures with the pattern of open chromatin allowed us to classify these putative regulatory regions into different chromatin states in mouse and pig limb primordia. Our profiling of the regulatory genome in mouse and pig limb buds offers a valuable resource in the evo-devo field for exploring mechanisms underlying the morphological evolution of the tetrapod limb.

Indexed as

ForelimbRegulatory Sequences, Nucleic AcidAnimalsChromatin ImmunoprecipitationEpigenomicsHistone CodeMiceSwine

Identifiers

PMID40210926
PMCPMC11986027

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.