Evidence map›Paper›PMID 40210919›Full record

ArticleScientific data2025

Chromosome-level genome assembly and annotation of Anthurium amnicola.

Haomin Lyu, Sheina B Sim, Scott M Geib, Joanne S L Imamura, Briette L Corpuz, Renee L Corpuz, Angela N Kauwe, Tyler J Simmonds, Claire N Arakawa, Roxana Y Myers and 5 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Haomin LyuUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0002-8783-0722
Sheina B SimUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0003-0914-6914
Scott M GeibUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0002-9511-5139
Joanne S L ImamuraDepartment of Tropical Plant and Soil Sciences, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.
Briette L CorpuzUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0009-0003-9353-9768
Renee L CorpuzUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0009-0005-6600-0788
Angela N KauweUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0003-3505-7472
Tyler J SimmondsUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0002-9703-5140
Claire N ArakawaUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.
Roxana Y MyersUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0002-7465-7895
Lisa M KeithUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0001-9974-1818
Qingyi YuUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0001-5393-5764
Tracie K MatsumotoUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA.ORCID http://orcid.org/0000-0001-6070-8834
Teresita D AmoreDepartment of Tropical Plant and Soil Sciences, University of Hawaii at Manoa, Honolulu, Hawaii, 96822, USA.ORCID http://orcid.org/0000-0002-7324-7042
Jon Y SuzukiUSDA ARS Daniel K. Inouye, U.S. Pacific Basin Agricultural Research Center, Hilo, Hawaii, 96720, USA. jon.suzuki@usda.gov.ORCID http://orcid.org/0009-0008-6949-0120

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anthurium amnicola is in the monocot family Araceae, subfamily Pothoideae and is a contributing species in Hawaii floriculture industry hybrids. To support future genetic improvements to this commodity, we sequenced and assembled the A. amnicola genome to chromosome-scale using PacBio HiFi and short-read Hi-C sequencing. A total of 98.51% of the 4.79 Gb genome is anchored into 15 chromosomes, with 99.2% gene completeness and a high LTR assembly index (LAI) score of 21.73, indicative of a complete, high-quality assembly. Annotation reveals the presence of 20,380 protein-coding genes, with 78.52% of the genome composed of repetitive sequences, predominantly long terminal repeat retrotransposons (LTR-RT). Phylogenetic analysis identified evolutionary relationships between A. amnicola and representative species in the Araceae and other plant families. This study provides the first reference genome sequence for the neotropical genus Anthurium and insights into Araceae evolution, benefiting the floriculture industry and evolutionary studies.

Indexed as

AraceaeChromosomes, PlantGenome, PlantMolecular Sequence AnnotationPhylogenyRetroelementsTerminal Repeat SequencesRetroelements

Identifiers

PMID40210919
PMCPMC11985945

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.