Evidence map›Paper›PMID 40210888›Full record

ArticleNature communications2025

Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision Repair.

Marianna Genta, Giulia Ferrara, Riccardo Capelli, Diego Rondelli, Sarah Sertic, Martino Bolognesi, Menico Rizzi, Franca Rossi, David Jeruzalmi, Antonio Chaves-Sanjuan and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Microbiology spectrum · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Marianna GentaDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Via Bovio 6, 28100, Novara, Italy.
Giulia FerraraDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Via Bovio 6, 28100, Novara, Italy.ORCID http://orcid.org/0009-0005-0923-0579
Riccardo CapelliDepartment of Biosciences, University of Milan, Milan, 20133, Italy.ORCID http://orcid.org/0000-0001-9522-3132
Diego RondelliDepartment of Biosciences, University of Milan, Milan, 20133, Italy.
Sarah SerticDepartment of Biosciences, University of Milan, Milan, 20133, Italy.ORCID http://orcid.org/0000-0003-1458-410X
Martino BolognesiDepartment of Biosciences, University of Milan, Milan, 20133, Italy.ORCID http://orcid.org/0000-0002-9253-5170
Menico RizziDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Via Bovio 6, 28100, Novara, Italy.ORCID http://orcid.org/0000-0002-7930-399X
Franca RossiDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Via Bovio 6, 28100, Novara, Italy.ORCID http://orcid.org/0000-0001-7836-9500
David JeruzalmiDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY, 10031, USA.ORCID http://orcid.org/0000-0001-5886-1370
Antonio Chaves-SanjuanDepartment of Biosciences, University of Milan, Milan, 20133, Italy. antonio.chaves@unimi.it.ORCID http://orcid.org/0000-0003-3287-9024
Riccardo MiggianoDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Via Bovio 6, 28100, Novara, Italy. riccardo.miggiano@uniupo.it.ORCID http://orcid.org/0000-0002-2159-3314

Funding

Fondazione Cariplo (Cariplo Foundation) 2016-0604Ministero dell'Istruzione, dell'Università e della Ricerca (Ministry of Education, University and Research) P2022P8KMF
6 · The paper itself

Abstract

Nucleotide excision repair (NER) represents one of the major molecular machineries that control chromosome stability in all living species. In Eubacteria, the initial stages of the repair process are carried out by the UvrABC excinuclease complex. Despite the wealth of structural data available, some crucial details of the pathway remain elusive. In this study, we present a structural investigation of the Mycobacterium tuberculosis UvrAUvrB complex and of the UvrA dimer, both in complex with damaged DNA. Our analyses yield insights into the DNA binding mode of UvrA, showing an unexplored conformation of Insertion Domains (IDs), underlying the essential role of these domains in DNA coordination. Furthermore, we observe an interplay between the ID and the UvrB Binding Domain (UBD): after the recognition of the damage, the IDs repositions with the concomitant reorganization of UBD, allowing the formation of the complex between UvrA and UvrB. These events are detected along the formation of the uncharacterized UvrA

Indexed as

Adenosine TriphosphatasesBacterial ProteinsDNA-Binding ProteinsDNA DamageDNA HelicasesDNA RepairEndodeoxyribonucleasesMycobacterium tuberculosisCrystallography, X-RayDNA, BacterialExcision RepairModels, MolecularProtein BindingProtein DomainsAdenosine TriphosphatasesBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA HelicasesEndodeoxyribonucleases

Identifiers

PMID40210888
PMCPMC11985968

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.