Evidence map›Paper›PMID 40207230›Full record

ArticleFrontiers in immunology2025

Integrating machine learning and multi-omics analysis to reveal nucleotide metabolism-related immune genes and their functional validation in ischemic stroke.

Tianzhi Li, Xiaojia Kang, Sijie Zhang, Yihan Wang, Jinshan He, Hongyan Li, Chen Shao, Jingsong Kang

Abstract read
In one paragraph

Article in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tianzhi LiDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.
Xiaojia KangDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.
Sijie ZhangDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.
Yihan WangDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.
Jinshan HeDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.
Hongyan LiDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.
Chen ShaoDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.
Jingsong KangDepartment of Pathophysiology, Key Laboratory of Pathobiology, Ministry of Education, College of Basical Medical Sciences, Jilin University, Changchun, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Ischemic stroke (IS) is a major global cause of death and disability, linked to nucleotide metabolism imbalances. This study aimed to identify nucleotide metabolism-related genes associated with IS and explore their roles in disease mechanisms for new diagnostic and therapeutic strategies. Methods: IS gene expression data were sourced from the GEO database. Differential expression analysis and weighted gene co-expression network analysis (WGCNA) were conducted in R, intersecting results with nucleotide metabolism-related genes. Functional enrichment and connectivity map (cMAP) analyses identified key genes and potential therapeutic agents. Core immune-related genes were determined using LASSO regression, SVM-RFE, and Random Forest algorithms. Immune cell infiltration levels and correlations were analyzed via CIBERSORT. Single-cell RNA sequencing (scRNA-seq) data and molecular docking assessed gene expression, localization, and gene-drug binding. Results: Thirty-three candidate genes were identified, mainly involved in immune and inflammatory responses. Conclusion: This study underscores the role of nucleotide metabolism in IS, identifying

Indexed as

Ischemic StrokeMachine LearningNucleotidesAnimalsComputational BiologyGene Expression ProfilingGene Regulatory NetworksHumansMiceMolecular Docking SimulationMultiomicsTranscriptomeNucleotidesbioinformatics analysisischemic strokemachine learningmolecular dockingnucleotide metabolism

Identifiers

PMID40207230
PMCPMC11979214

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.