Evidence map›Paper›PMID 40205597›Full record

ArticleGenome medicine2025

Genomic and functional analysis of rmp locus variants in Klebsiella pneumoniae.

Margaret M C Lam, Stephen M Salisbury, Logan P Treat, Ryan R Wick, Louise M Judd, Kelly L Wyres, Sylvain Brisse, Kimberly A Walker, Virginia L Miller, Kathryn E Holt

Abstract read
In one paragraph

Article in Genome medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Hypermucoviscosity inJournal of bacteriology · 2026
    Review
  3. Article
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  5. The genomic landscape of Klebsiella pneumoniae in Russia.World journal of microbiology & biotechnology · 2026
    Article
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  7. Article
  8. Review
  9. Genomic analysis ofbioRxiv : the preprint server for biology · 2026
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  12. First Isolation ofMicroorganisms · 2026
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  13. The acquisition ofmBio · 2026
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  16. The acquisition ofbioRxiv : the preprint server for biology · 2025
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Margaret M C LamDepartment of Infectious Diseases, School of Translational Medicine, Monash University, The Burnet Institute, Level 285 Commercial Rd, Melbourne, 3004, Australia. margaret.lam@monash.edu.
Stephen M SalisburyDepartment of Microbiology and Immunology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Logan P TreatDepartment of Microbiology and Immunology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Ryan R WickDepartment of Infectious Diseases, School of Translational Medicine, Monash University, The Burnet Institute, Level 285 Commercial Rd, Melbourne, 3004, Australia.
Louise M JuddDepartment of Infectious Diseases, School of Translational Medicine, Monash University, The Burnet Institute, Level 285 Commercial Rd, Melbourne, 3004, Australia.
Kelly L WyresDepartment of Infectious Diseases, School of Translational Medicine, Monash University, The Burnet Institute, Level 285 Commercial Rd, Melbourne, 3004, Australia.
Sylvain BrisseBiodiversity and Epidemiology of Bacterial Pathogens, Institut Pasteur, Université Paris Cité, Paris, France.
Kimberly A WalkerDepartment of Microbiology and Immunology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Virginia L MillerDepartment of Microbiology and Immunology, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Kathryn E HoltDepartment of Infectious Diseases, School of Translational Medicine, Monash University, The Burnet Institute, Level 285 Commercial Rd, Melbourne, 3004, Australia.

Funding

Understanding hypermucoviscosity in KlebsiellaR01AI148197 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MILLER, VIRGINIA L, WHITFIELD, CHRIS · 2020 to 2023
$1.8M
Bill and Melinda Gates Foundation OPP025280National Health and Medical Research Council APP2009163NIAID NIH HHS R01 AI148197
6 · The paper itself

Abstract

backgroundKlebsiella pneumoniae is an opportunistic pathogen and a leading cause of healthcare-associated infections in hospitals, which are frequently antimicrobial resistant (AMR). Exacerbating the public health threat posed by K. pneumoniae, some strains also harbour additional hypervirulence determinants typically acquired via mobile genetic elements such as the well-characterised large virulence plasmid KpVP-1. The rmpADC locus is considered a key virulence feature of K. pneumoniae and is associated with upregulated capsule expression and the hypermucoid phenotype, which can enhance virulence by contributing to serum resistance. Typically such strains have been susceptible to all antimicrobials besides ampicillin; however, the recent emergence of AMR hypermucoid strains is concerning.

methodsHere, we investigate the genetic diversity, evolution, mobilisation and prevalence of rmpADC, in a dataset of 14,000 genomes from isolates of the Klebsiella pneumoniae species complex, and describe the RmST virulence typing scheme for tracking rmpADC variants for the purposes of genomic surveillance. Additionally, we examine the functionality of representatives for variants of rmpADC introduced into a mutant strain lacking its native rmpADC locus.

resultsThe rmpADC locus was detected in 7% of the dataset, mostly from genomes of K. pneumoniae and a very small number of K. variicola and K. quasipneumoniae. Sequence variants of rmpADC grouped into five distinct lineages (rmp1, rmp2, rmp2A, rmp3 and rmp4) that corresponded to unique mobile elements, and were differentially distributed across different populations (i.e. clonal groups) of K. pneumoniae. All variants were demonstrated to produce enhanced capsule production and hypermucoviscosity.

conclusionsThese results provide an overview of the diversity and evolution of a prominent K. pneumoniae virulence factor and support the idea that screening for rmpADC in K. pneumoniae isolates and genomes is valuable to monitor the emergence and spread of hypermucoid K. pneumoniae, including AMR strains.

Indexed as

Bacterial ProteinsGenetic LociGenetic VariationGenome, BacterialGenomicsKlebsiella pneumoniaeHumansKlebsiella InfectionsVirulenceVirulence FactorsBacterial ProteinsVirulence FactorsGenomic surveillanceHypermucoidHypermucoviscosityHypervirulenceKlebsiella pneumoniaeVirulenceVirulence plasmids

Identifiers

PMID40205597
PMCPMC11984045

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.