ArticleNature2025
NEURD offers automated proofreading and feature extraction for connectomics.
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Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18citing papers in PubMed
–field-weighted citation impact
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Who cites it
18 citing papers in PubMed.
- Ultrastructural Evidence of Altered Dendritic Morphology in the Prefrontal Cortex of Alzheimer's Model Rats.Neuroscience bulletin · 2026Article
- Synaptic Organization of the Primate Retina: Toward a Human Foveal Connectome.Annual review of vision science · 2026Review
- Connectome quality converges predictably to reveal optimal stopping points during proofreading.bioRxiv : the preprint server for biology · 2026Article
- Article
- Physical contact reveals a hidden layer of cortical architecture.bioRxiv : the preprint server for biology · 2026Article
- Functional bipartite invariance in mouse primary visual cortex receptive fields.Nature neuroscience · 2026Article
- vEMRec: High-Resolution Volume Electron Microscopy Reconstruction Based on Structure-Preserving and High-Fidelity 3D Alignment.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Synaptic-resolution connectomics: towards large brains and connectomic screening.Nature reviews. Neuroscience · 2026Review
- The grand challenge in cellular neurophysiology.Frontiers in cellular neuroscience · 2026Article
- Cancer Neuroscience: Decoding Neural Circuitry in Tumor Evolution for Targeted Therapy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Review
- The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex.Nature neuroscience · 2025Article
- VSOT: volume-surface optimization for accurate ultrastructure analysis of dendritic spines.Bioinformatics (Oxford, England) · 2025Article
- Article
- Sparse Annotation is Sufficient for Bootstrapping Dense Segmentation.bioRxiv : the preprint server for biology · 2024Article
- Functional connectomics reveals general wiring rule in mouse visual cortex.bioRxiv : the preprint server for biology · 2024Article
- Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex.bioRxiv : the preprint server for biology · 2024Article
- A Novel Semi-automated Proofreading and Mesh Error Detection Pipeline for Neuron Extension.bioRxiv : the preprint server for biology · 2023Article
- CAVE: Connectome Annotation Versioning Engine.bioRxiv : the preprint server for biology · 2023Article
Corrections and comments
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Authors and funding
58 authors.
Brendan CeliiCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.ORCID 0009-0008-5489-7438
Stelios PapadopoulosCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
Zhuokun DingCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-8610-5182
Paul G FaheyCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-6844-3551
Eric WangCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-1084-7059
Christos PapadopoulosCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
Alexander B KuninCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-1949-9457
Saumil PatelCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
J Alexander BaePrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-4681-6342
Agnes L BodorAllen Institute for Brain Science, Seattle, WA, USA.
Derrick BrittainAllen Institute for Brain Science, Seattle, WA, USA.
JoAnn BuchananAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-4212-5560
Daniel J BumbargerAllen Institute for Brain Science, Seattle, WA, USA.
Manuel A CastroPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Erick CobosCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
Sven DorkenwaldPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Leila ElabbadyAllen Institute for Brain Science, Seattle, WA, USA.
Akhilesh HalageriPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Zhen JiaPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Chris JordanPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Dan KapnerAllen Institute for Brain Science, Seattle, WA, USA.
Nico KemnitzPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-0260-4532
Sam KinnAllen Institute for Brain Science, Seattle, WA, USA.
Kisuk LeePrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Kai LiComputer Science Department, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-2095-7024
Ran LuPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Thomas MacrinaPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-0622-9338
Gayathri MahalingamAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0003-3718-5013
Eric MitchellPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-7487-1744
Shanka Subhra MondalPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0003-1252-0129
Shang MuPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Barak NehoranPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0001-7371-0829
Sergiy PopovychPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Casey M Schneider-MizellAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0001-9477-3853
William SilversmithPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Marc TakenoAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-8384-7500
Russel TorresAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-2876-4382
Nicholas L TurnerPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
William WongPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Jingpeng WuPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.
Szi-Chieh YuPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0009-0001-9684-0156
Wenjing YinAllen Institute for Brain Science, Seattle, WA, USA.
Daniel XenesResearch and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Baltimore, MD, USA.ORCID 0009-0008-4812-0120
Lindsey M KitchellResearch and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Baltimore, MD, USA.
Patricia K RivlinResearch and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Baltimore, MD, USA.ORCID 0000-0002-3435-1955
Victoria A RoseResearch and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Baltimore, MD, USA.ORCID 0000-0003-4863-9279
Caitlyn A BishopResearch and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Baltimore, MD, USA.
Brock WesterResearch and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Baltimore, MD, USA.ORCID 0000-0002-1500-2143
Emmanouil FroudarakisCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
Edgar Y WalkerDepartment of Physiology and Biophysics, University of Washington, Seattle, WA, USA.ORCID 0000-0003-0057-957X
Fabian SinzCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
H Sebastian SeungPrinceton Neuroscience Institute, Princeton University, Princeton, NJ, USA.ORCID 0000-0002-8591-6733
Forrest CollmanAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-0280-7022
Nuno Maçarico da CostaAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0003-2001-4568
R Clay ReidAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-8697-6797
Xaq PitkowCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.
Andreas S ToliasCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-4305-6376
Jacob ReimerCenter for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA. reimer@bcm.edu.ORCID 0000-0003-4364-8846
Funding
Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ANDERSON, DAVID J, PACHTER, LIOR S · 2017 to 2021
$64.7MTRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8MVISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8MProbabilistic coding in cortical populationsR01EY026927 · NEI · BAYLOR COLLEGE OF MEDICINE · PI MA, WEI JI, TOLIAS, ANDREAS · 2017 to 2021
$1.9MAnatomical connectivity and activity in primary visual cortex of mouseRF1MH130416 · NIMH · BAYLOR COLLEGE OF MEDICINE · PI PITKOW, ZACHARY SAMUEL, REIMER, JACOB · 2022 to 2022
$1.3MNEI NIH HHS P30 EY002520NEI NIH HHS R01 EY026927NIMH NIH HHS RF1 MH130416NIMH NIH HHS U19 MH114830NLM NIH HHS T15 LM007093
Abstract
We are in the era of millimetre-scale electron microscopy volumes collected at nanometre resolution
Indexed as
ConnectomeNeuronsSoftwareAnimalsAutomationAxonsDendritesDendritic SpinesHumansImaging, Three-DimensionalMiceMicroscopy, Electron
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.