Evidence map›Paper›PMID 40205197›Full record

ArticleNature medicine2025

Genomic census of invasive nontyphoidal Salmonella infections reveals global and local human-to-human transmission.

Haiyang Zhou, Chenghao Jia, Ping Shen, Chenghu Huang, Lin Teng, Beibei Wu, Zining Wang, Haoqiu Wang, Yonghong Xiao, Stephen Baker and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. ZoonoticEmerging microbes & infections · 2026
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  10. Droplet Digital CRISPR for Nucleic Acid Detection.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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  12. Carbapenem-resistantFrontiers in cellular and infection microbiology · 2026
    Article
  13. PreventingFrontiers in microbiology · 2026
    Article
  14. Harnessing a high-qualityBiosafety and health · 2025
    Article
  15. Laboratory epidemiology ofOne health (Amsterdam, Netherlands) · 2025
    Article
  16. Article
  17. Article
  18. eLife · 2025
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Haiyang Zhou *Department of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China.
Chenghao Jia *Department of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China.
Ping Shen *State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, People's Republic of China.ORCID http://orcid.org/0000-0003-4677-6747
Chenghu HuangDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China.
Lin TengKey Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Hangzhou, People's Republic of China.ORCID http://orcid.org/0000-0002-6871-0338
Beibei WuZhejiang Provincial Center for Disease Control and Prevention, Hangzhou, People's Republic of China.
Zining WangDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China.ORCID http://orcid.org/0000-0001-7107-1613
Haoqiu WangAffiliated Hangzhou Xixi Hospital, Zhejiang University School of Medicine, Hangzhou, People's Republic of China.
Yonghong XiaoState Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, National Medical Center for Infectious Diseases, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, People's Republic of China.
Stephen BakerSchool of Clinical Medicine, University of Cambride, Cambridge, UK.ORCID http://orcid.org/0000-0002-7797-9080
François-Xavier WeillInstitut Pasteur, Université Paris Cité, Unité des Bactéries pathogènes entériques, Paris, France.ORCID http://orcid.org/0000-0001-9941-5799
Yan LiDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China.
Min YueDepartment of Veterinary Medicine, College of Animal Sciences, Zhejiang University, Hangzhou, People's Republic of China. myue@ucas.ac.cn.ORCID http://orcid.org/0000-0002-6787-0794

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extraintestinal infections caused by Enterobacteriaceae represent a global concern, further exacerbated by the growing prevalence of antimicrobial resistance (AMR). Among these, invasive nontyphoidal Salmonella (iNTS) infections have become increasingly challenging to manage, and their global spread remains poorly understood. Here we compiled 1,115 patient records and generated a comprehensive genomic dataset on iNTS. Age and sex emerged as significant risk factors, with Salmonella Enteritidis identified as a major cause. We observed serovar-specific AMR patterns, with notable resistance to fluoroquinolones and third-generation cephalosporins. A global phylogenomic analysis of Enteritidis revealed three distinct clades, highlighting the accumulation of AMR determinants during its international spread. Importantly, our genomic and transmission analyses suggest that iNTS infections may involve human-to-human transmission, with diarrheal patients acting as potential intermediaries, deviating from typical zoonotic pathways. Collectively, our newly generated cohort and iNTS genomic dataset provide a framework for precise local iNTS burden and underscore emerging transmission trends.

Indexed as

Salmonella enteritidisSalmonella InfectionsAdolescentAdultAgedAnti-Bacterial AgentsChildChild, PreschoolDrug Resistance, BacterialFemaleGenome, BacterialGenomicsHumansMaleMiddle AgedPhylogenyAnti-Bacterial Agents

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.