Evidence map›Paper›PMID 40200324›Full record

ArticleBMC research notes2025

An improved toolkit of gateway- and gibson assembly-compatible vectors for protoplast transfection and agrobacterium-mediated plant transformation.

Jeffrey R Allen, Michael Flanagan, Sunita Pathak, Samantha K Emenecker, Ryan J Emenecker, Lucia C Strader

Abstract read
In one paragraph

Article in BMC research notes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Molecular basis for thermoresponsive protein condensation in plants.bioRxiv : the preprint server for biology · 2025
    Article
  3. Rational Engineering of Patchoulene Synthase fromInternational journal of molecular sciences · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Jeffrey R AllenDepartment of Biology, Duke University, Durham, NC, 27708, USA.ORCID http://orcid.org/0000-0003-0148-3860
Michael FlanaganDepartment of Biology, Duke University, Durham, NC, 27708, USA.
Sunita PathakDepartment of Biology, Duke University, Durham, NC, 27708, USA.
Samantha K EmeneckerDepartment of Biology, Washington University in St. Louis, St. Louis, MO, 63130, USA.
Ryan J EmeneckerDepartment of Biology, Washington University in St. Louis, St. Louis, MO, 63130, USA.
Lucia C StraderDepartment of Biology, Duke University, Durham, NC, 27708, USA. lucia.strader@duke.edu.ORCID http://orcid.org/0000-0002-7600-7204

Funding

NIGMS administrative equipment supplement for R35 GM136338-02R35GM136338 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Lucia Strader · 2020 to 2026
$3.2M
National Science Foundation PGRP BIO-2112056NIGMS NIH HHS R35 GM136338NIH HHS R35 GM136338
6 · The paper itself

Abstract

objectiveUnderstanding the regulation and function of plant genes is essential for addressing the challenges faced by modern agriculture. Plant transformation, in conjunction with fluorescence microscopy, offers a powerful approach to investigate the dynamic behavior of plant genes and the proteins they encode. We previously developed a set of Gateway-compatible tissue-specific plant transformation vectors. In this paper we aim to expand the toolkit of vectors available for Agrobacterium-mediated plant transformation and protoplast transfection.

resultsHere, we introduce new Agrobacterium-mediated plant transformation vectors by introducing additional fluorophores to create the pJRA vector series. Additionally, we introduce the pLCS series of vectors, a new set of modular Gateway- and Gibson assembly-compatible vectors designed for protoplast transfection. All described vectors are available from Addgene to serve as a resource for the plant research community.

Indexed as

AgrobacteriumGenetic VectorsProtoplastsTransfectionTransformation, GeneticPlants, Genetically ModifiedAgrobacterium transformationCloningFluorescence microscopyGatewayGibson-AssemblyLive cell imagingPlant transformationProtoplast transfectionTransgenic plantTransient expression

Identifiers

PMID40200324
PMCPMC11980152

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.