Evidence map›Paper›PMID 40198523›Full record

ArticleVirus genes2025

Global population dynamics and evolutionary selection in classical swine fever virus complete genomes: insights from Bayesian coalescent analysis.

Roopa Mahadevaswamy, Vijay Muruganantham, Varsha Ramesh, Shijili Mambully, Kuralayanapalya Puttahonnappa Suresh, Jagadish Hiremath, Shivasharanappa Nayakvadi, Baldev Gulati, Sharanagouda Patil

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Roopa MahadevaswamyICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0009-0001-3338-5643
Vijay MurugananthamICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0009-0001-3493-4800
Varsha RameshICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0009-0005-8242-2833
Shijili MambullyICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0009-0000-9717-6923
Kuralayanapalya Puttahonnappa SureshICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0000-0002-3005-0522
Jagadish HiremathICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0000-0002-6606-3771
Shivasharanappa NayakvadiICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0000-0003-3311-5886
Baldev GulatiICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India.ORCID http://orcid.org/0000-0002-4338-7941
Sharanagouda PatilICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Yelahanka, Bengaluru, Karnataka, 560 064, India. sharanspin13@gmail.com.ORCID http://orcid.org/0000-0003-2018-1227

Funding

DAHD, Govt of India K-11053(5313)/21/2019-LH (E-14082)
6 · The paper itself

Abstract

Classical swine fever virus (CSFV) is a pathogen that affects pigs and wild boars. This contagious RNA virus is a high threat to swine industries throughout the world because it has high mortality and morbidity rates, leading to economic losses. Although some studies have analyzed whole-genome sequences, but often focus on isolates from only a few countries, while others started with whole-genome analysis before narrowing down to specific gene region like E2. In addition, several studies have predominantly focused on isolated geographic regions. Our study leverages a global dataset of 220 CSFV whole-genome sequences retrieved from the NCBI repository along with two CSFV complete genome sequence from our laboratory (Accession Number: MH734359.1 and OR4282229.1) and carefully curated to 66 sequences. The refined dataset was subjected to Bayesian analysis along with selection pressure analysis. The outcome of this experiment, the mean substitution rate was estimated at 2.06 × 10

Indexed as

Classical Swine FeverClassical Swine Fever VirusEvolution, MolecularGenome, ViralSelection, GeneticAnimalsBayes TheoremPhylogenySwineWhole Genome SequencingBayesian analysisBEASTCSFVSelection pressuretMRCA

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.