Evidence map›Paper›PMID 40197002›Full record

ArticleJournal of the American Chemical Society2025

Evidence of a Three-State Mechanism in DNA Hairpin Folding.

Brendan Cullinane, Kunihiko Ishii, Simi Kaur, Tahei Tahara, Randall H Goldsmith

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Brendan CullinaneDepartment of Chemistry, University of Wisconsin-Madison, 1101 University Ave., Madison, Wisconsin 53705, United States.ORCID 0000-0003-4625-5554
Kunihiko IshiiMolecular Spectroscopy Laboratory, RIKEN, Wako, Saitama 351-0198, Japan.ORCID 0000-0001-5714-5997
Simi KaurDepartment of Chemistry, University of Wisconsin-Madison, 1101 University Ave., Madison, Wisconsin 53705, United States.ORCID 0000-0003-1536-5996
Tahei TaharaMolecular Spectroscopy Laboratory, RIKEN, Wako, Saitama 351-0198, Japan.ORCID 0000-0002-6340-8535
Randall H GoldsmithDepartment of Chemistry, University of Wisconsin-Madison, 1101 University Ave., Madison, Wisconsin 53705, United States.ORCID 0000-0001-9083-8592

Funding

Development of Cavity-Enhanced Single-Molecule Electronic and Vibrational Spectroscopy for Mechanistic Studies of BiomoleculesR01GM136981 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GOLDSMITH, RANDALL H · 2020 to 2023
$1.2M
NIGMS NIH HHS R01 GM136981
6 · The paper itself

Abstract

DNA hairpins are a model system for biomolecule folding as well as key structures in biology and nanotechnology. However, limitations in traditional solution-phase spectroscopy shorten the window of observable kinetics and cannot account for static heterogeneity. Here, we show that the application of two-dimensional fluorescence lifetime correlation spectroscopy (2DFLCS) to a solution-phase molecule trapped in an anti-Brownian electrokinetic (ABEL) trap bypasses those limitations, enabling kinetic analysis of the dynamics of single solution-phase molecules on a broad range of time scales down to microseconds. The analysis unambiguously shows that DNA hairpin folding proceeds via a three-state system, where hairpins fold initially on the scale of tens to hundreds of microseconds from a random coil to a partially closed intermediate and then form a stable fully closed state.

Indexed as

DNAInverted Repeat SequencesKineticsNucleic Acid ConformationSpectrometry, FluorescenceDNA

Identifiers

PMID40197002
PMCPMC12179765

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.