Evidence map›Paper›PMID 40196669›Full record

ArticlebioRxiv : the preprint server for biology2025

FAIRification of computational models in biology.

Irina Balaur, David P Nickerson, Danielle Welter, Judith A H Wodke, Francois Ancien, Tom Gebhardt, Valentin Grouès, Henning Hermjakob, Matthias König, Nicole Radde and 7 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Irina BalaurLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.ORCID 0000-0002-3671-895X
David P NickersonAuckland Bioengineering Institute, University of Auckland, New Zealand.ORCID 0000-0003-4667-9779
Danielle WelterLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.ORCID 0000-0003-1058-2668
Judith A H WodkeMedical Informatics Laboratory, University Medicine Greifswald, Germany.ORCID 0009-0009-9712-060X
Francois AncienLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.ORCID 0000-0002-0895-1746
Tom GebhardtMedical Informatics Laboratory, University Medicine Greifswald, Germany.
Valentin GrouèsLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.ORCID 0000-0001-6501-0806
Henning HermjakobEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), UK.ORCID 0000-0001-8479-0262
Matthias KönigInstitute for Biology, Institute for Theoretical Biology, Humboldt University of Berlin, Germany.ORCID 0000-0003-1725-179X
Nicole RaddeInstitute for Stochastics and Applications, University Stuttgart, Germany.ORCID 0000-0002-5145-0058
Adrien RougnyLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.ORCID 0000-0002-2118-035X
Reinhard SchneiderLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.ORCID 0000-0002-8278-1618
Rahuman S Malik-SheriffEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), UK.ORCID 0000-0003-0705-9809
Kirubel Biruk ShiferawMedical Informatics Laboratory, University Medicine Greifswald, Germany.ORCID 0000-0002-7411-1411
Melanie StefanMedical School Berlin, Berlin, Germany.ORCID 0000-0002-6086-7357
Venkata SatagopamLuxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.ORCID 0000-0002-6532-5880
Dagmar WaltemathMedical Informatics Laboratory, University Medicine Greifswald, Germany.ORCID 0000-0002-5886-5563

Funding

TR&D3: Standards and Tools for Simulator Composition and Credibility portalP41EB023912 · NIBIB · UNIVERSITY OF WASHINGTON · PI HERBERT M. SAURO · 2018 to 2026
$11.4M
NIBIB NIH HHS P41 EB023912
6 · The paper itself

Abstract

Computational models are essential for studying complex systems which, particularly in clinical settings, need to be quality-approved and transparent. To enhance the communication of a model's features and capabilities, we propose an adaptation of the Findability, Accessibility, Interoperability and Reusability (FAIR) indicators published by the Research Data Alliance to assess models encoded in domain-specific standards, such as those established by COMBINE. The assessments guide FAIRification and add value to models.

Identifiers

PMID40196669
PMCPMC11974689

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.