Evidence map›Paper›PMID 40193708›Full record

ArticleNucleic acids research2025

Two redox-responsive LysR-type transcription factors control the oxidative stress response of Agrobacterium tumefaciens.

Janka J Schmidt, Vivian B Brandenburg, Hannah Elders, Saba Shahzad, Sina Schäkermann, Ronja Fiedler, Lisa R Knoke, Yvonne Pfänder, Pascal Dietze, Hannah Bille and 6 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Janka J SchmidtMicrobial Biology, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0009-0005-4526-4215
Vivian B BrandenburgBioinformatics Group, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0002-2443-2583
Hannah EldersProtein Crystallography, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0009-0001-8534-5838
Saba ShahzadErnst Ruska-Centre for Microscopy and Spectroscopy with Electrons (ER-C-3): Structural Biology, Institute of Biological Information Processing (IBI-6): Structural Cell Biology, Forschungszentrum Jülich, 52428 Jülich, Germany.
Sina SchäkermannApplied Microbiology, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0001-7969-0005
Ronja FiedlerMicrobial Biology, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0009-0008-0838-7007
Lisa R KnokeMicrobial Biochemistry, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0002-2424-1779
Yvonne PfänderMicrobial Biology, Ruhr University Bochum, 44801 Bochum, Germany.
Pascal DietzeApplied Microbiology, Ruhr University Bochum, 44801 Bochum, Germany.
Hannah BilleMicrobial Biology, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0009-0002-5714-2467
Bela GärtnerMicrobial Biology, Ruhr University Bochum, 44801 Bochum, Germany.
Lennart J AlbinMicrobial Biology, Ruhr University Bochum, 44801 Bochum, Germany.
Lars I LeichertMicrobial Biochemistry, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0002-5666-9681
Julia E BandowApplied Microbiology, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0003-4100-8829
Eckhard HofmannProtein Crystallography, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0003-4874-372X
Franz NarberhausMicrobial Biology, Ruhr University Bochum, 44801 Bochum, Germany.ORCID 0000-0002-8552-5310

Funding

European Regional Development FundGerman Federal State of NRWGerman Research Foundation 240/11-2InnovationsFoRUM Host-Microbe-Interaction IF 018-22-TP8Microbial Substrate Conversion (MiCon)Ruhr University Bochum
6 · The paper itself

Abstract

Pathogenic bacteria often encounter fluctuating reactive oxygen species (ROS) levels, particularly during host infection, necessitating robust redox-sensing mechanisms for survival. The LysR-type transcriptional regulator (LTTR) OxyR is a widely conserved bacterial thiol-based redox sensor. However, members of the Rhizobiales also encode LsrB, a second LTTR with potential redox-sensing function. This study explores the roles of OxyR and LsrB in the plant-pathogen Agrobacterium tumefaciens. Through single and combined deletions, we observed increased H2O2 sensitivity, underscoring their function in oxidative defense. Genome-wide transcriptome profiling under H2O2 exposure revealed that OxyR and LsrB co-regulate key antioxidant genes, including katG, encoding a bifunctional catalase/peroxidase. Agrobacterium tumefaciens LsrB possesses four cysteine residues potentially involved in redox sensing. To elucidate the structural basis for redox-sensing, we applied single-particle cryo-EM (cryogenic electron microscopy) to experimentally confirm an AlphaFold model of LsrB, identifying two proximal cysteine pairs. In vitro thiol-trapping coupled with mass spectrometry confirmed reversible thiol modifications of all four residues, suggesting a functional role in redox regulation. Collectively, these findings reveal that A. tumefaciens employs two cysteine-based redox sensing transcription factors, OxyR and LsrB, to withstand oxidative stress encountered in host and soil environments.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsOxidative StressTranscription FactorsCatalaseCysteineGene Expression Regulation, BacterialHydrogen PeroxideOxidation-ReductionReactive Oxygen SpeciesBacterial ProteinsCatalaseCysteineHydrogen PeroxideLysR protein, BacteriaReactive Oxygen SpeciesTranscription Factors

Identifiers

PMID40193708
PMCPMC11975290

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.