Evidence map›Paper›PMID 40187387›Full record

ArticleMethods (San Diego, Calif.)2025

Optimized toolkit for the manipulation of immortalized axolotl fibroblasts.

Benjamin J Tajer, Glory Kalu, Sarah Jay, Eric Wynn, Antoine Decaux, Paul Gilbert, Hani D Singer, Madeline D Kidd, Jeffery A Nelson, Noora Harake and 18 more

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Benjamin J TajerDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Glory KaluDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Sarah JayDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA; Master de Biologie, École Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Université de Lyon, 69342 Lyon Cedex 07, France.
Eric WynnDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Antoine DecauxDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA; Master de Biologie, École Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Université de Lyon, 69342 Lyon Cedex 07, France.
Paul GilbertDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Hani D SingerDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Madeline D KiddDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Jeffery A NelsonBauer Core Facility, Harvard University, Northwest Building, Room B239, 52 Oxford St., Cambridge, MA 02138, USA.
Noora HarakeDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Noah J LopezDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Nathan R SouchetDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Anna G LuongDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Aaron M SavageDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Sangwon MinDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Alparslan KarabacakDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Sebastian BöhmDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Ryan T KimDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Tim FroitzheimDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Konstantinos SousounisDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Katherine CourtemancheDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Jihee HanDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Duygu Payzin-DogruDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Steven J BlairDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA.
Stéphane RoyDepartment of Stomatology, Faculty of Dentistry, Université de Montréal, Montréal, Québec H3T 1J4, Canada.
Ji-Feng FeiDepartment of Pathology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, Guangdong 510080, China.
Elly M TanakaInstitute of Molecular Biotechnology, Austrian Academy of Sciences (IMBA), Vienna Biocenter (VBC), Dr.-Bohr-Gasse 3, 1030 Vienna, Austria.
Jessica L WhitedDepartmet of Stem Cell and Regenerative Biology, Harvard University, 7 Divinity Ave., Cambridge, MA 02318, USA; Broad Institute, 415 Main St., Cambridge, MA 02142, USA; Department of Orthopedic Surgery, Brigham & Women's Hospital, Mass General Brigham, 75 Francis St., Boston, MA 02115, USA. Electronic address: jessica_whited@harvard.edu.

Funding

Diversity in Biomedical Sciences Via Personalized Research and Education Programs for Post-BaccalaureatesR25GM109436 · NIGMS · HARVARD UNIVERSITY · PI D'SOUZA, VICTORIA MANUEL, VELEZ-RUIZ, GISSELLE A · 2016 to 2024
$2.5M
IDENTIFYING ROADBLOCKS TO LIMB REGENERATIONR01HD095494 · NICHD · HARVARD UNIVERSITY · PI WHITED, JESSICA L. · 2019 to 2023
$1.9M
NICHD NIH HHS R01 HD095494NIGMS NIH HHS R25 GM109436
6 · The paper itself

Abstract

The axolotl salamander model has broad utility for regeneration studies, but this model is limited by a lack of efficient cell-culture-based tools. The Axolotl Limb-1 (AL-1) fibroblast line, the only available immortalized axolotl cell line, was first published over 20 years ago, but many established molecular biology techniques, such as lipofectamine transfection, CRISPR-Cas9 mutagenesis, and antibiotic selection, work poorly or remain untested in AL-1 cells. Innovating technologies to manipulate AL-1 cells in culture and study their behavior following transplantation into the axolotl will complement in-vivo studies, decrease the number of animals used, and enable the faster, more streamlined investigation of regenerative biology questions. Here, we establish transfection, mutagenesis, antibiotic selection, and in-vivo transplantation techniques in axolotl AL-1 cells. These techniques will enable efficient culture with AL-1 cells and guide future tool development for the culture and manipulation of other salamander cell lines.

Indexed as

Ambystoma mexicanumCell Culture TechniquesFibroblastsAnimalsCell LineCRISPR-Cas SystemsRegenerationTransfection

Identifiers

PMID40187387
PMCPMC12433595

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.