Evidence map›Paper›PMID 40186352›Full record

ReviewMolecular therapy : the journal of the American Society of Gene Therapy2025

Machine learning approaches enable the discovery of therapeutics across domains.

Prabal Chhibbar, Jishnu Das

Abstract readReview
In one paragraph

Review in Molecular therapy : the journal of the American Society of Gene Therapy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Prabal ChhibbarCentre for Systems Immunology, Department of Immunology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA; Integrative Systems Biology PhD Program, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA. Electronic address: prc44@pitt.edu.
Jishnu DasCentre for Systems Immunology, Department of Immunology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA; Department of Computational and Systems Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA. Electronic address: jishnu@pitt.edu.

Funding

Linking genome variation to transcriptional network dynamics in human B cellsU01HG012041 · NHGRI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Jishnu Das, HARINDER SINGH · 2021 to 2026
$6.1M
Uncovering latent factors underlying weak and robust responses to influenza vaccine in healthy and obese older adultsR01AI170108 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI John F Alcorn, Jishnu Das · 2022 to 2026
$3.9M
Using three-dimensional protein networks to uncover immuno-modulatory molecular phenotypes in infectious diseaseDP2AI164325 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DAS, JISHNU · 2021 to 2025
$2.4M
B and Tfh cell dynamics underlying durable antibody responses to flu vaccine in childrenU01AI179514 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI John F Alcorn, Jishnu Das · 2024 to 2026
$2.0M
NHGRI NIH HHS U01 HG012041NIAID NIH HHS DP2 AI164325NIAID NIH HHS R01 AI170108NIAID NIH HHS U01 AI179514
6 · The paper itself

Abstract

Multi-modal datasets have grown exponentially in the last decade. This has created an enormous demand for machine learning models that can predict complex outcomes by leveraging cellular, molecular, and humoral profiles. Corresponding inference of mechanisms can help to uncover new therapeutic targets. Here, we discuss how biological principles guide the design of predictive models and how interpretable machine learning can lead to novel mechanistic insights. We provide descriptions of multiple learning techniques and how suited they are to domain adaptations. Finally, we talk about broad learning capabilities of foundation models on large datasets and whether they can be used to provide meaningful inference about biological datasets.

Indexed as

Drug DiscoveryMachine LearningComputational BiologyHumansdeep learningfoundation modelsinterpretable machine learningtherapeutics

Identifiers

PMID40186352
PMCPMC12126764

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.