Evidence map›Paper›PMID 40185744›Full record

ArticleNature communications2025

Role of charges in a dynamic disordered complex between an IDP and a folded domain.

Katrine Bugge, Andrea Sottini, Miloš T Ivanović, Freia S Buus, Daniel Saar, Catarina B Fernandes, Fabienne Kocher, Jacob H Martinsen, Benjamin Schuler, Robert B Best and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Katrine BuggeREPIN and the Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark. katbugge@gmail.com.ORCID http://orcid.org/0000-0002-6286-6243
Andrea SottiniDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8014-5987
Miloš T IvanovićDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-3164-9411
Freia S BuusREPIN and the Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Daniel SaarREPIN and the Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0001-5197-4591
Catarina B FernandesREPIN and the Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Fabienne KocherDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0009-0004-2527-8874
Jacob H MartinsenREPIN and the Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Benjamin SchulerDepartment of Biochemistry, University of Zurich, Zurich, Switzerland. schuler@bioc.uzh.ch.ORCID http://orcid.org/0000-0002-5970-4251
Robert B BestLaboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA. robert.best2@nih.gov.ORCID http://orcid.org/0000-0002-7893-3543
Birthe B KragelundREPIN and the Structural Biology and NMR Laboratory, The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark. bbk@bio.ku.dk.ORCID http://orcid.org/0000-0002-7454-1761

Funding

Det Frie Forskningsråd (Danish Council for Independent Research) 9040-00164BNovo Nordisk Fonden (Novo Nordisk Foundation) NNF18OC0032996Novo Nordisk Fonden (Novo Nordisk Foundation) NNF18OC0033926Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 310030_197776
6 · The paper itself

Abstract

Protein complexes involving intrinsically disordered proteins (IDPs) cover a continuum from IDPs that fully fold upon binding to IDPs that remain fully disordered in the complex. Here we demonstrate a case of charge-driven interactions of a folded domain with an oppositely charged IDP that remains completely disordered in the complex. Using the negatively charged and fully disordered prothymosin α and the positively charged and folded globular domain of histone H1.0, we show that they form a low-micromolar-affinity complex without fixed relative orientations or persistent contacts between specific residues. Using 25 charge variants of the globular domain, we find that the binding affinity can be modulated both by net charge and charge clustering on the folded domain, indicating some selectivity in highly charged complexes. Our results highlight that a folded protein can provide a charged surface onto which an oppositely charged IDP can bind while retaining disorder. We expect that more such complexes exist.

Indexed as

HistonesIntrinsically Disordered ProteinsProtein FoldingProtein PrecursorsThymosinHumansModels, MolecularProtein BindingProtein DomainsHistonesIntrinsically Disordered ProteinsProtein Precursorsprothymosin alphaThymosin

Identifiers

PMID40185744
PMCPMC11971343

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.