Evidence map›Paper›PMID 40184633›Full record

ArticleThe ISME journal2025

Adaptive genomic plasticity in large-genome, broad-host-range vibrio phages.

Charles Bernard, Yannick Labreuche, Carine Diarra, Pauline Daszkowski, Karine Cahier, David Goudenège, Martin G Lamarche, Gregory B Whitfield, Manon Lang, Jeffrey Valencia and 7 more

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Antivirulence Activity and Therapeutic Potential of JumboJournal of microbiology and biotechnology · 2025
    Article
  7. The ecology and evolution of microbial immune systems: a look on the wild vibrio side.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Charles BernardInstitut Pasteur, Université de Paris, Centre nationale de la recherche scientifique (CNRS), Unité mixte de recherche (UMR) 3525, Microbial Evolutionary Genomics, 28 rue du Dr Roux, 75015 Paris, France.
Yannick LabreucheInstitut Français de recherche pour l'exploitation de la mer (IFREMER), Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, CS 10070, F-29280 Plouzané, France.
Carine DiarraDépartement de Microbiologie, Infectiologie et Immunologie, Université de Montréal, 2900, boul. Édouard-Montpetit, QC H3T 1J4 Montréal, Canada.
Pauline DaszkowskiInstitut Français de recherche pour l'exploitation de la mer (IFREMER), Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, CS 10070, F-29280 Plouzané, France.
Karine CahierInstitut Français de recherche pour l'exploitation de la mer (IFREMER), Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, CS 10070, F-29280 Plouzané, France.
David GoudenègeInstitut Français de recherche pour l'exploitation de la mer (IFREMER), Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, CS 10070, F-29280 Plouzané, France.
Martin G LamarcheDépartement de Microbiologie, Infectiologie et Immunologie, Université de Montréal, 2900, boul. Édouard-Montpetit, QC H3T 1J4 Montréal, Canada.
Gregory B WhitfieldDépartement de Microbiologie, Infectiologie et Immunologie, Université de Montréal, 2900, boul. Édouard-Montpetit, QC H3T 1J4 Montréal, Canada.
Manon LangDépartement de Microbiologie, Infectiologie et Immunologie, Université de Montréal, 2900, boul. Édouard-Montpetit, QC H3T 1J4 Montréal, Canada.
Jeffrey ValenciaDépartement de Microbiologie, Infectiologie et Immunologie, Université de Montréal, 2900, boul. Édouard-Montpetit, QC H3T 1J4 Montréal, Canada.
Justine GroseilleSorbonne Universités, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, 29688 Roscoff, France.
Damien PielSorbonne Universités, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, 29688 Roscoff, France.
Yan-Jiun LeeBiochemistry and Molecular Division, New England Biolabs, 240 County Road Ipswich, MA 01938, United States.
Peter WeigeleBiochemistry and Molecular Division, New England Biolabs, 240 County Road Ipswich, MA 01938, United States.
Yves V BrunDépartement de Microbiologie, Infectiologie et Immunologie, Université de Montréal, 2900, boul. Édouard-Montpetit, QC H3T 1J4 Montréal, Canada.
Eduardo P C RochaInstitut Pasteur, Université de Paris, Centre nationale de la recherche scientifique (CNRS), Unité mixte de recherche (UMR) 3525, Microbial Evolutionary Genomics, 28 rue du Dr Roux, 75015 Paris, France.
Frédérique Le RouxInstitut Français de recherche pour l'exploitation de la mer (IFREMER), Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, CS 10070, F-29280 Plouzané, France.

Funding

Agence Nationale de la Recherche ANR-20-CE35-0014Canada Excellence Research Chairs Program CERC-2022-00051European Research Council 884988
6 · The paper itself

Abstract

The host range of a bacteriophage-the diversity of hosts it can infect-is central to understanding phage ecology and applications. Whereas most well-characterized phages have narrow host ranges, broad-host-range phages represent an intriguing component of marine ecosystems. The genetic and evolutionary mechanisms driving their generalism remain poorly understood. In this study, we analyzed Schizotequatroviruses and their Vibrio crassostreae hosts, collected from an oyster farm. Schizotequatroviruses exhibit broad host ranges, large genomes (~252 kbp) encoding 26 transfer ribonucleic acids, and conserved genomic organization interspersed with recombination hotspots. These recombination events, particularly in regions encoding receptor-binding proteins and antidefense systems, highlight their adaptability to host resistance. Some lineages demonstrated the ability of receptor-switching between OmpK and LamB. Despite their broad host range, Schizotequatroviruses were rare in the environment. Their scarcity could not be attributed to burst size, which was comparable to other phages in vitro, but may result from ecological constraints or fitness trade-offs, such as their preference for targeting generalist vibrios in seawater rather than the patho-phylotypes selected in oyster farms. Our findings clarify the genetic and ecological variables shaping Schizotequatrovirus generalism and provide a foundation for future phage applications in aquaculture and beyond.

Indexed as

BacteriophagesGenome, ViralHost SpecificityVibrioAnimalsCrassostreaPhylogenyRecombination, GeneticSeawaterbroad host rangecoevolutionlarge genomerecombinationSchizotequatrovirusestrade-offvibrio

Identifiers

PMID40184633
PMCPMC12028318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.