Evidence map›Paper›PMID 40182482›Full record

ArticlePlant diversity2025

Genome compaction underlies the molecular adaptation of bay cedar (

Miaomiao Shi, Ping Liang, Zhonglai Luo, Yu Zhang, Shiran Gu, Xiangping Wang, Xin Qian, Shuguang Jian, Kuaifei Xia, Shijin Li and 3 more

Abstract readCase Reports
PubMed Full text at PMC Publisher
In one paragraph

Article in Plant diversity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Miaomiao ShiState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Ping LiangDepartment of Biological Sciences, Brock University, St. Catharines, Ontario, L2A 3S1, Canada.
Zhonglai LuoSchool of Life Sciences and Medicine, Shandong University of Technology, Zibo 255000, China.
Yu ZhangState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Shiran GuState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Xiangping WangState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Xin QianCollege of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Shuguang JianSouth China National Botanical Garden, Guangzhou 510650, China.
Kuaifei XiaState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Shijin LiState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Zhongtao ZhaoState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Tieyao TuState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Dianxiang ZhangState Key Laboratory of Plant Diversity and Specialty Crops / Guangdong Provincial Key Laboratory of Applied Botany / Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

•The assembled genome of Bay cedar is 292.8 Mb, representing a small genome size within Fabales.•The compact genome was likely caused by remarkable reduction of long terminal repeat retrotransposons and gene losses.•The genes related to cold tolerance and pest/pathogen resistance were largely lost.•Expanded, positively selected, or retained genes after WGD may drive Bay cedar's adaptation to tropical coral islands.•Differentially expressed genes under salt and drought stresses were particularly identified in the abscisic acid pathway.

Indexed as

Coral islandsExtreme environmentGene lossGenome reductionMolecular adaptationTransposable elements reduction

Identifiers

PMID40182482
PMCPMC11962907

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.