Evidence map›Paper›PMID 40179121›Full record

ArticlePloS one2025

Using artificial intelligence tools to automate data extraction for living evidence syntheses.

Evan Mitchell, Elisha B Are, Caroline Colijn, David J D Earn

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Evan MitchellDepartment of Mathematics and Statistics, McMaster University, Hamilton, ON,Canada.ORCID https://orcid.org/0000-0001-7228-141X
Elisha B AreDepartment of Mathematics, Simon Fraser University, Burnaby, BC,Canada.ORCID https://orcid.org/0000-0002-0710-7607
Caroline ColijnDepartment of Mathematics, Simon Fraser University, Burnaby, BC,Canada.
David J D EarnDepartment of Mathematics and Statistics, McMaster University, Hamilton, ON,Canada.ORCID https://orcid.org/0000-0002-7562-1341

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Living evidence synthesis (LES) involves repeatedly updating a systematic review or meta-analysis at regular intervals to incorporate new evidence into the summary results. It requires a considerable amount of human time investment in the article search, collection, and data extraction phases. Tools exist to automate the retrieval of relevant journal articles, but pulling data out of those articles is currently still a manual process. In this article, we present a proof-of-concept Python program that leverages artificial intelligence (AI) tools (specifically, ChatGPT) to parse a batch of journal articles and extract relevant results, greatly reducing the human time investment in this action without compromising on accuracy. Our program is tested on a set of journal articles that estimate the mean incubation period for COVID-19, an epidemiological parameter of importance for mathematical modelling. We also discuss important limitations related to the total amount of information and rate at which that information can be sent to the AI engine. This work contributes to the ongoing discussion about the use of AI and the role such tools can have in scientific research.

Indexed as

Artificial IntelligenceInformation Storage and RetrievalCOVID-19HumansMeta-Analysis as TopicSARS-CoV-2SoftwareSystematic Reviews as Topic

Identifiers

PMID40179121
PMCPMC11967977

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.