Evidence map›Paper›PMID 40174589›Full record

ArticleStructure (London, England : 1993)2025

Structure of the Staphylococcus aureus bacteriophage 80α neck shows details of the DNA, tail completion protein, and tape measure protein.

James L Kizziah, Amarshi Mukherjee, Laura K Parker, Terje Dokland

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Viruses · 2026
    Article
  4. Article
  5. Article
  6. Formation and role of the portal ofbioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. TheJournal of virology · 2025
    Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

James L KizziahDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Amarshi MukherjeeDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Laura K ParkerDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Terje DoklandDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA. Electronic address: dokland@uab.edu.

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
Structural basis for pathogenicity island mobilization in S. aureusR01AI083255 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2009 to 2023
$5.6M
Midwest Consortium for High Resolution Cryoelectron MicroscopyU24GM116789 · NIGMS · PURDUE UNIVERSITY · PI BULLITT, ESTHER, DAI, WEI · 2017 to 2021
$3.5M
Acquisition of cryo-electron microscopeS10OD024978 · OD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DOKLAND, TERJE · 2020 to 2020
$2.0M
NCI NIH HHS P30 CA013148NIAID NIH HHS R01 AI083255NIGMS NIH HHS U24 GM116789NIH HHS S10 OD024978
6 · The paper itself

Abstract

The Staphylococcus aureus pathogenicity islands (SaPIs), including SaPI1, are a type of mobile genetic elements (MGEs) that are mobilized at high frequency by "helper" bacteriophages, such as 80α, leading to packaging of the SaPI genomes into virions made from helper-encoded structural proteins. 80α and SaPI1 virions consist of an icosahedral head connected via a portal vertex to a long, non-contractile tail. A connector or "neck" forms the interface between the tail and the head. Here, we have determined the high-resolution structure of the neck section of SaPI1 virions, including the dodecameric portal and head-tail-connector proteins, and the hexameric head-tail joining, tail terminator and major tail proteins. We also resolved the DNA, the tail completion protein (TCP), and the tape measure protein (TMP) inside the tail, features that have not previously been observed at high resolution. Our study provides insights into the assembly and infection process in this important group of MGEs.

Indexed as

DNA, ViralStaphylococcus aureusStaphylococcus PhagesViral Tail ProteinsCryoelectron MicroscopyGenomic IslandsModels, MolecularVirionDNA, ViralViral Tail Proteins3D reconstructionbacteriophage tailconnectorcryo-electron microscopyDNA packagingejectionportal proteinStaphylococcus aureus pathogenicity island 1virus structure

Identifiers

PMID40174589
PMCPMC12145261

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.