Evidence map›Paper›PMID 40172288›Full record

ArticleCurrent protocols2025

High-Throughput Culture and DNA Isolation Methods for Aspergillus fumigatus.

Francisca C Reyes Márquez, Ben Auxier, Bo Briggeman, Eveline Snelders

Abstract read
In one paragraph

Article in Current protocols, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Francisca C Reyes MárquezLaboratory of Genetics, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.
Ben AuxierLaboratory of Genetics, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.
Bo BriggemanLaboratory of Genetics, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.
Eveline SneldersLaboratory of Genetics, Plant Sciences Group, Wageningen University, Wageningen, The Netherlands.ORCID https://orcid.org/0000-0002-7868-7928

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aspergillus fumigatus is an opportunistic human fungal pathogen that is widely spread in the environment. The need to screen a large number of environmental or clinical isolates for phenotypic and/or genotypic purposes can be challenging and time consuming when using the protocols that are currently available. We have developed a novel approach that allows one to inoculate cultures, grow individual A. fumigatus isolates, and subsequently isolate DNA of sufficient quality for PCR and/or whole genome sequencing, all in a 96-well format. Compared to currently available methods, our protocols reduce both cost and labor significantly and are compatible with any experimental setup that uses a 96-well format. © 2025 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: 96-well-format mini slant culture and preparation of spore suspension for Aspergillus fumigatus Basic Protocol 2: PCR-quality DNA isolation Basic Protocol 3: High-purity DNA isolation after mini mycelial mat culture.

Indexed as

Aspergillus fumigatusDNA, FungalHigh-Throughput Screening AssaysHumansPolymerase Chain ReactionSpores, FungalDNA, Fungal96‐well formatAspergillus fumigatusgenotypinglarge‐scale fungal screeningphenotyping

Identifiers

PMID40172288
PMCPMC11963831

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.