Evidence map›Paper›PMID 40172259›Full record

ArticleBriefings in bioinformatics2025

Elucidating the interactions between Kinesin-5/BimC and the microtubule: insights from TIRF microscopy and molecular dynamics simulations.

Wenhan Guo, Yuan Gao, Dan Du, Jason E Sanchez, Yupeng Li, Weihong Qiu, Lin Li

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Wenhan GuoDepartment of Physics, University of Texas at El Paso, 500 W University Ave, El Paso, TX 79968, United States.
Yuan GaoDepartment of Physics, Oregon State University, 1500 Jefferson Way, Corvallis, OR 97330, United States.
Dan DuComputational Science Program, University of Texas at El Paso, 500 W University Ave, El Paso, TX 79968, United States.
Jason E SanchezComputational Science Program, University of Texas at El Paso, 500 W University Ave, El Paso, TX 79968, United States.
Yupeng LiDepartment of Pharmaceutical Sciences, University of Texas at El Paso, 500 W University Ave, El Paso, TX 79968, United States.
Weihong QiuDepartment of Physics, Oregon State University, 1500 Jefferson Way, Corvallis, OR 97330, United States.
Lin LiDepartment of Physics, University of Texas at El Paso, 500 W University Ave, El Paso, TX 79968, United States.ORCID 0000-0001-6447-2398

Funding

UTEP Border Biomedical Research CenterU54MD007592 · NIMHD · UNIVERSITY OF TEXAS EL PASO · PI RENATO J AGUILERA · 2019 to 2026
$35.1M
Deciphering the Molecular Assembly Mechanism of Giant DNA VirusesR01GM129525 · NIGMS · UNIVERSITY OF TEXAS EL PASO · PI XIAO, CHUAN · 2019 to 2023
$1.8M
Mechanistic Analysis of Kinesin-14 Motility and Regulation for Bipolar Spindle AssemblyR01GM127922 · NIGMS · OREGON STATE UNIVERSITY · PI QIU, WEIHONG · 2019 to 2023
$1.5M
Developing and applying large-scale simulation approach to understand the mechanisms of kinesins' motilities along microtubulesSC1GM132043 · NIGMS · UNIVERSITY OF TEXAS EL PASO · PI LI, LIN · 2019 to 2022
$1.5M
National Institute of Health U54MD007592NIGMS NIH HHS R01 GM127922NIGMS NIH HHS R01 GM129525NIGMS NIH HHS SC1 GM132043NIH HHS R01GM129525NIMHD NIH HHS U54 MD007592Welch Foundation AH-2126-20220331
6 · The paper itself

Abstract

Kinesin-5 s are bipolar motor proteins that contribute to cell division by crosslinking and sliding apart antiparallel microtubules inside the mitotic spindle. However, the mechanism underlying the interactions between kinesin-5 and the microtubule remains poorly understood. In this study, we investigated the binding of BimC, a kinesin-5 motor from Aspergillus nidulans, to the microtubule using a combination of total internal reflection fluorescence (TIRF) microscopy and molecular dynamics (MD) simulations. TIRF microscopy experiments revealed that increasing the concentration of KCl in the motility buffer from 0 mM to 150 mM completely abolishes the ability of BimC to bind to the microtubule. Consistent with this experimental finding, MD simulations demonstrated a significant reduction in the strength of electrostatic interactions between BimC and microtubules at 150 mM KCl compared to 0 mM KCl. Furthermore, we identified several salt bridges at the BimC-microtubule interface, with positively charged residues on BimC interacting with negatively charged residues on the tubulin heterodimer. These results provide mechanistic insights into the role of electrostatic interactions in kinesin-5-microtubule binding, advancing our understanding of the molecular underpinnings of kinesin-5 motility.

Indexed as

Fungal ProteinsKinesinsMicrotubulesMolecular Dynamics SimulationAspergillus nidulansMicroscopy, FluorescenceProtein BindingFungal ProteinsKinesinselectrostaticskinesinmolecular dynamicssalt bridgesTIRF microscopy

Identifiers

PMID40172259
PMCPMC11962974

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.