Evidence map›Paper›PMID 40169869›Full record

ArticleCommunications biology2025

A nuclear tRNA-derived fragment triggers immunity in Arabidopsis.

Sung-Il Kim, Haomin Lyu, Dinesh S Pujara, Yogendra Bordiya, Padam S Bhatt, José Mayorga, Prince K Zogli, Pritha Kundu, Haewon Chung, Xingxing Yan and 5 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sung-Il KimDepartment of Biology, Texas State University, San Marcos, USA.ORCID http://orcid.org/0000-0002-1061-0609
Haomin Lyu *Texas A&M AgriLife Research, Texas A&M University System, Dallas, TX, USA.
Dinesh S Pujara *Department of Biology, Texas State University, San Marcos, USA.
Yogendra Bordiya *Department of Biology, Texas State University, San Marcos, USA.
Padam S BhattDepartment of Biology, Texas State University, San Marcos, USA.
José MayorgaDepartment of Biology, Texas State University, San Marcos, USA.
Prince K ZogliDepartment of Entomology & Department of Biochemistry, University of Nebraska, Lincoln, NE, USA.
Pritha KunduDepartment of Entomology & Department of Biochemistry, University of Nebraska, Lincoln, NE, USA.ORCID http://orcid.org/0000-0001-9598-3959
Haewon ChungDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.
Xingxing YanDepartment of Biochemistry & Biophysics, Texas A&M University, College Station, TX, USA.
Xiuren ZhangDepartment of Biochemistry & Biophysics, Texas A&M University, College Station, TX, USA.
Jonghwan KimDepartment of Molecular Biosciences, University of Texas, Austin, TX, USA.ORCID http://orcid.org/0000-0002-9919-9843
Joe LouisDepartment of Entomology & Department of Biochemistry, University of Nebraska, Lincoln, NE, USA.ORCID http://orcid.org/0000-0001-7137-8797
Qingyi YuDaniel K. Inouye U.S. Pacific Basin Agricultural Research Center, USDA Agricultural Research Service, Hilo, HI, USA.
Hong-Gu KangDepartment of Biology, Texas State University, San Marcos, USA. kang@txstate.edu.ORCID http://orcid.org/0000-0002-5842-8945

Funding

Investigating regulators controlling differentiation potential of ES cellsR01GM112722 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI KIM, JONGHWAN · 2015 to 2023
$2.8M
National Science Foundation (NSF) IOS-1553613NIGMS NIH HHS R01 GM112722
6 · The paper itself

Abstract

In Arabidopsis, effector-triggered immunity (ETI) against avirulent Pseudomonas syringae pv. tomato (Pst) correlates with the rapid, Dicer-Like 1 (DCL1)-dependent nuclear accumulation of a 31-nt 5'-tRNA fragment derived from Asp-tRNA (tRF

Indexed as

ArabidopsisPlant DiseasesPlant ImmunityRNA, TransferArabidopsis ProteinsArgonaute ProteinsCell NucleusGene Expression Regulation, PlantPseudomonas syringaeArabidopsis ProteinsArgonaute ProteinsRNA, Transfer

Identifiers

PMID40169869
PMCPMC11962134

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.