Evidence map›Paper›PMID 40169608›Full record

ArticleScientific data2025

An chromosome-level haplotype-resolved genome assembly and annotation of pitaya (Selenicereus polyrhizus).

Juncheng Li, Wenlong Luo, Biao Jiang, Satish Kumar, Mengfei Lin, Qingming Sun

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PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Biology · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Juncheng Li *Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences; Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs; Guangdong Provincial Key Laboratory of Science and Technology Research on Fruit Tree, Guangzhou, 510640, China.ORCID http://orcid.org/0000-0002-0114-8029
Wenlong Luo *Guangdong Key Laboratory for New Technology Research of Vegetables, Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
Biao JiangGuangdong Key Laboratory for New Technology Research of Vegetables, Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
Satish KumarThe New Zealand Institute for Plant & Food Research Limited, Private Bag 1401, Havelock North, 4157, New Zealand.
Mengfei LinJiangxi Provincial Key Laboratory of Plantation and High Valued Utilization of Specialty Fruit Tree and Tea, Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, China.
Qingming SunInstitute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences; Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs; Guangdong Provincial Key Laboratory of Science and Technology Research on Fruit Tree, Guangzhou, 510640, China. sunqingming@gdaas.cn.

Funding

National Science Foundation of China | Young Scientists Fund 32102341
6 · The paper itself

Abstract

Pitaya, (Selenicereus spp.), a fruit originating from North and Central America and extensively cultivated in China and Vietnam, holds significant economic value. Utilizing PacBio HiFi sequencing and Oxford Nanopore Technologies ultra-long sequencing, aided by Hi-C data, we have assembled a chromosome-level haplotype-resolved genome. The sizes of the two haplotype genomes were determined to be 1.477 Gb (hap1, contig N50 = 133.35 Mb) and 1.442 Gb (hap2, contig N50 = 132.57 Mb), with 96.7% (hap1) and 98.4% (hap2) respectively allocated to 11 pseudochromosomes. Hap1 comprises 58.94% repeat sequences and predicts a total of 29,139 protein-coding gene models and 18,378 non-coding RNAs. Hap2 comprises 58.37% repeat sequences and predicts a total of 28,538 protein-coding gene models and 19,458 non-coding RNAs. Notably, 93.5% and 93.6% of protein-coding genes were annotated for the two haplotypes. The high-quality genome assembly presented in this study provides a valuable resource for future ecological, evolutionary, biological, and breeding research in pitaya.

Indexed as

CactaceaeChromosomes, PlantGenome, PlantHaplotypesMolecular Sequence Annotation

Identifiers

PMID40169608
PMCPMC11961769

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.