Evidence map›Paper›PMID 40168976›Full record

ArticleThe American journal of tropical medicine and hygiene2025

Conventional DNA Extraction Followed by Real-Time PCR Had Higher Sensitivity for Detection of Mycobacterium Tuberculosis in Clinical Samples Compared to Standard Methods.

Angel Sebastian Rodriguez-Pazmiño, Bernardo Castro-Rodríguez, Greta Esther Cardenas-Franco, Greta Franco-Sotomayor, Elsy Carvajal, Joselyn Calderon, Darwin Santiago Paredes, Heidy Buenaño-Morales, Manuel González, Lina Macero and 3 more

Abstract readComparative Study
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Angel Sebastian Rodriguez-PazmiñoOne Health Research Group, Universidad de Las Américas, Quito, Ecuador.
Bernardo Castro-RodríguezOne Health Research Group, Universidad de Las Américas, Quito, Ecuador.
Greta Esther Cardenas-FrancoOne Health Research Group, Universidad de Las Américas, Quito, Ecuador.
Greta Franco-SotomayorInstituto Nacional de Salud Pública e Investigación, Guayaquil, Ecuador.
Elsy CarvajalOne Health Research Group, Universidad de Las Américas, Quito, Ecuador.
Joselyn CalderonInstituto Nacional de Salud Pública e Investigación, Guayaquil, Ecuador.
Darwin Santiago ParedesOne Health Research Group, Universidad de Las Américas, Quito, Ecuador.
Heidy Buenaño-MoralesInstituto Nacional de Salud Pública e Investigación, Guayaquil, Ecuador.
Manuel GonzálezInstituto Nacional de Salud Pública e Investigación, Guayaquil, Ecuador.
Lina MaceroUniversidad Católica Santiago de Guayaquil, Guayaquil, Ecuador.
Rita GarcíaUniversidad Católica Santiago de Guayaquil, Guayaquil, Ecuador.
Solon Alberto OrlandoInstituto Nacional de Salud Pública e Investigación, Guayaquil, Ecuador.
Miguel Angel Garcia-BereguiainOne Health Research Group, Universidad de Las Américas, Quito, Ecuador.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mycobacterium tuberculosis complex (MTBC), the causative agent of tuberculosis (TB), remains a significant global health challenge, with an estimated 10.8 million cases diagnosed and 1.25 million deaths in 2023, according to the WHO. In this context, enhancing TB case detection using more sensitive diagnostic methods is essential. Here, we compared the performance of two commercial real-time polymerase chain reaction (PCR) kits with the reference standards of smear microscopy, culture, and Gene Xpert. By analyzing 402 clinical specimens, we found that conventional DNA extraction, followed by real-time PCR, using either of the two commercial kits provided the highest sensitivity for detecting MTBC. Positivity values of 48.98-60.07% and 50.34-53.24% were obtained with the commercial kits "VIASURE MTBC + non tuberculous mycobacterias (NTM) Real-Time PCR Detection Kit" (Certest, Spain) and "ANYPLEX™ MTB/NTM Real-Time Detection Kit" (Seegene, South Korea), respectively. In contrast, the reference standards yielded positivity values of 14.75% (smear microscopy), 32.65% (culture), and 28.95% (GeneXpert assay). These alternative methods should be considered as valuable tools to strengthen TB control and prevention strategy.

Indexed as

DNA, BacterialMycobacterium tuberculosisReal-Time Polymerase Chain ReactionTuberculosisFemaleHumansReagent Kits, DiagnosticSensitivity and SpecificityDNA, BacterialReagent Kits, Diagnostic

Identifiers

PMID40168976
PMCPMC12139567

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.