Evidence map›Paper›PMID 40168465›Full record

ArticleScience signaling2025

RIPK3 coordinates RHIM domain-dependent antiviral inflammatory transcription in neurons.

Sigal B Kofman, Lan H Chu, Joshua M Ames, Suny Dayane Chavarria, Katrina Lichauco, Brian P Daniels, Andrew Oberst

Abstract read
In one paragraph

Article in Science signaling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sigal B KofmanDepartment of Immunology, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0002-9670-834X
Lan H ChuDepartment of Immunology, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0002-0378-6614
Joshua M AmesDepartment of Immunology, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0002-9282-5637
Suny Dayane ChavarriaDepartment of Immunology, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0003-0098-2780
Katrina LichaucoDepartment of Immunology, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0002-9480-2893
Brian P DanielsDepartment of Cell Biology and Neuroscience, Rutgers University, Piscataway, NJ 08854, USA.
Andrew OberstDepartment of Immunology, University of Washington, Seattle, WA 98109, USA.ORCID 0000-0002-9500-7912

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Training in Cellular & Molecular BiologyT32GM136534 · NIGMS · UNIVERSITY OF WASHINGTON · PI Andrew Atwell Oberst, LARRY S ZWEIFEL · 2021 to 2026
$5.8M
ZBP1 activationR01AI153246 · NIAID · UNIVERSITY OF WASHINGTON · PI OBERST, ANDREW ATWELL · 2021 to 2025
$3.1M
Innate Immunity to West Nile VirusR01AI179722 · NIAID · UNIVERSITY OF WASHINGTON · PI Michael Gale, Andrew Atwell Oberst · 2024 to 2026
$2.6M
The physiological role of RIPK3-dependent necroptosisR01AI108685 · NIAID · UNIVERSITY OF WASHINGTON · PI OBERST, ANDREW ATWELL · 2014 to 2018
$2.5M
Innate Immune Mechanisms Controlling Flavivirus NeurovirulenceR01AI183793 · NIAID · UNIVERSITY OF MINNESOTA · PI Michael Gale, Andrew Atwell Oberst · 2024 to 2026
$2.4M
The Role of the RIP Kinases in Coordinating Neuroinflammation and Host DefenseR01AI132595 · NIAID · UNIVERSITY OF WASHINGTON · PI OBERST, ANDREW ATWELL · 2018 to 2022
$2.2M
Basic Training at the Intersection of Innate and Adaptive Immunity in DiseaseT32AI106677 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL, GOVERMAN, JOAN M · 2013 to 2022
$2.1M
"Survivor" neurons drive persistent inflammation following West Nile virus infectionR21AI178512 · NIAID · UNIVERSITY OF WASHINGTON · PI OBERST, ANDREW ATWELL · 2023 to 2024
$485k
RIP3 mediated restriction of neuropathogenesis during viral encephalitisF32AI129254 · NIAID · UNIVERSITY OF WASHINGTON · PI DANIELS, BRIAN · 2017 to 2018
$88k
Investigating IRG1-driven regulation of flavivirus-induced neuroinflammationF31AI154840 · NIAID · UNIVERSITY OF WASHINGTON · PI KOFMAN, SIGAL BARRIENTOS · 2020 to 2021
$65k
NIAID NIH HHS F31 AI154840NIAID NIH HHS F32 AI129254NIAID NIH HHS R01 AI108685NIAID NIH HHS R01 AI132595NIAID NIH HHS R01 AI153246NIAID NIH HHS R01 AI179722NIAID NIH HHS R01 AI183793NIAID NIH HHS R21 AI178512NIAID NIH HHS T32 AI106677NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM136534
6 · The paper itself

Abstract

Neurons are postmitotic, nonregenerative cells that have evolved fine-tuned immunological responses to maintain life-long cellular integrity, including resistance to common programmed cell death pathways such as necroptosis. We previously demonstrated a necroptosis-independent role for the key necroptotic kinase RIPK3 in host defense against neurotropic flavivirus infection. Here, we show that RIPK3 activation had distinct outcomes in primary cortical neurons when compared with mouse embryonic fibroblasts (MEFs) during Zika virus (ZIKV) infection or after sterile activation. We found that RIPK3 activation did not induce neuronal death but instead drove antiviral gene transcription after ZIKV infection. Although RIPK3 activation in MEFs induced cell death, ablation of downstream cell death effectors unveiled a RIPK3-dependent transcriptional program that largely overlapped with that observed in ZIKV-infected neurons. In death-resistant MEFs, RIPK3-dependent transcription relied on interactions with the RHIM domain-containing proteins RIPK1 and TRIF, similar to the requirements for the RIPK3-dependent antiviral transcriptional signature in ZIKV-infected neurons. These findings suggest that the pleotropic functions of RIPK3 are largely context dependent and that in cells that are resistant to cell death, RIPK3 acts as a mediator of inflammatory transcription.

Indexed as

NeuronsReceptor-Interacting Protein Serine-Threonine KinasesTranscription, GeneticZika Virus InfectionAnimalsCells, CulturedFibroblastsInflammationMiceMice, Inbred C57BLNecroptosisZika VirusReceptor-Interacting Protein Serine-Threonine KinasesRipk1 protein, mouseRipk3 protein, mouse

Identifiers

PMID40168465
PMCPMC12042699

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.